{"id":"W4212789670","doi":"10.3899/jrheum.210952","title":"A Distinct Plasma Microbiome But Not Gut Microbiome in Patients With Systemic Lupus Erythematosus Compared to Healthy Individuals","year":2022,"lang":"en","type":"article","venue":"The Journal of Rheumatology","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":24,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"National Center for Research Resources; National Center for Advancing Translational Sciences; National Institute of Arthritis and Musculoskeletal and Skin Diseases; National Institutes of Health; U.S. Department of Veterans Affairs","keywords":"Microbiome; Medicine; Pathogenesis; Immunology; Alpha diversity; Gastrointestinal tract; Feces; Gut flora; Internal medicine; Microbiology; Biology; Bioinformatics; Species diversity; Ecology","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":true,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002457235,0.0002511533,0.0003449954,0.0005093857,0.000318322,0.0004678163,0.00007974332,0.0003361244,0.002512802],"category_scores_gemma":[0.001225012,0.0001116128,0.0001759216,0.0004477809,0.0002166919,0.0002362838,0.0003047673,0.0002372827,0.0002114857],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001360548,"about_ca_system_score_gemma":0.0001059031,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005885373,"about_ca_topic_score_gemma":0.0006668685,"domain_scores_codex":[0.9997329,0.00006315683,0.00002946576,0.00009344288,0.00003702784,0.00004396402],"domain_scores_gemma":[0.9994349,0.0001308834,0.0002838257,0.00002479712,0.00003478986,0.00009085518],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001177447,0.00004764019,0.9670671,0.000085834,0.00009657674,0.000708872,0.0002860762,0.00005746109,0.02027297,0.00003813549,0.0002190145,0.009942779],"study_design_scores_gemma":[0.00001712142,0.0002463468,0.9959591,0.00001601303,0.00004182462,0.002293676,0.0002479099,0.000127214,0.0006570568,0.00006678572,0.0003225264,0.000004357091],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9988694,0.0004986553,0.0001052859,0.00005493118,0.000005049758,0.000002725863,0.0001430268,0.00000485681,0.000316127],"genre_scores_gemma":[0.9995461,0.0001170656,0.0001234371,0.0000366926,0.000008786316,0.000003216272,0.00008211508,0.000001661636,0.00008087602],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002512802,"threshold_uncertainty_score":0.008406222,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008542763476291348,"score_gpt":0.233118542825887,"score_spread":0.2245757793495957,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}