{"id":"W4212877656","doi":"10.1128/mra.01072-21","title":"Draft Hybrid Genome Assembly of a Canadian Cyclospora cayetanensis Isolate","year":2022,"lang":"en","type":"article","venue":"Microbiology Resource Announcements","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":8,"is_retracted":false,"has_abstract":true,"ca_institutions":"Health Canada; University of Calgary; University of Guelph; Public Health Agency of Canada","funders":"Ontario Ministry of Agriculture, Food and Rural Affairs; Public Health Agency of Canada","keywords":"Minion; Cyclospora cayetanensis; Contig; Nanopore sequencing; Sequence assembly; Biology; Genome; Whole genome sequencing; Computational biology; Cyclospora; Genetics; Virology; Gene; Microbiology; Cryptosporidium; Transcriptome","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004303296,0.0009981884,0.0008473368,0.002564532,0.00196569,0.001486496,0.0008165568,0.0007092482,0.005632992],"category_scores_gemma":[0.0008457671,0.0005700217,0.001042364,0.004174022,0.0004691135,0.0003810227,0.001045649,0.001375639,0.002356485],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.003373836,"about_ca_system_score_gemma":0.007423768,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.2688242,"about_ca_topic_score_gemma":0.383252,"domain_scores_codex":[0.9995205,0.00001699835,0.00002362478,0.0001349643,0.0002094013,0.00009457522],"domain_scores_gemma":[0.9995247,0.00006155402,0.00004458357,0.00004180824,0.0002296788,0.00009767152],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001436435,0.0001454465,0.009131495,0.001030895,0.0002717355,0.001313784,0.001544404,0.002829435,0.9181527,0.001636886,0.01455453,0.04795222],"study_design_scores_gemma":[0.0003767259,0.0008178239,0.2644503,0.0003877573,0.001637841,0.00219865,0.002462876,0.01688554,0.239111,0.001904451,0.4693277,0.0004392606],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.5512087,0.003208053,0.06691972,0.0008138155,0.0004857698,0.001184614,0.3484971,0.006647311,0.02103498],"genre_scores_gemma":[0.2546586,0.002118521,0.1110815,0.0003697296,0.0000605176,0.0005850581,0.6103549,0.001744978,0.01902614],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2688242,"threshold_uncertainty_score":0.534519,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009097277470821896,"score_gpt":0.199640945168311,"score_spread":0.1905436676974891,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}