{"id":"W4212877656","doi":"10.1128/mra.01072-21","title":"Draft Hybrid Genome Assembly of a Canadian Cyclospora cayetanensis Isolate","year":2022,"lang":"en","type":"article","venue":"Microbiology Resource Announcements","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":8,"is_retracted":false,"has_abstract":true,"ca_institutions":"Health Canada; University of Calgary; University of Guelph; Public Health Agency of Canada","funders":"Ontario Ministry of Agriculture, Food and Rural Affairs; Public Health Agency of Canada","keywords":"Minion; Cyclospora cayetanensis; Contig; Nanopore sequencing; Sequence assembly; Biology; Genome; Whole genome sequencing; Computational biology; Cyclospora; Genetics; Virology; Gene; Microbiology; Cryptosporidium; Transcriptome","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002548391,0.0002050662,0.0002628301,0.0002347438,0.0003496197,0.000008232623,0.0003960939,0.00007188121,0.00008846875],"category_scores_gemma":[0.00001300776,0.0002231582,0.0001172817,0.0002133881,0.0001276779,5.930278e-7,0.0004227736,0.0001255069,0.00001196583],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000594334,"about_ca_system_score_gemma":0.0001735323,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004895339,"about_ca_topic_score_gemma":0.00293944,"domain_scores_codex":[0.9985677,0.0001179209,0.000315531,0.0004482426,0.00006620862,0.0004844029],"domain_scores_gemma":[0.9992434,0.000007472893,0.0001565264,0.0004108274,0.00007867057,0.0001031192],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00007320923,0.00004912693,0.00447772,0.000007136948,0.0002375962,0.00001422135,0.0001725143,0.0004025818,0.9878739,0.000007888016,0.006587409,0.00009669531],"study_design_scores_gemma":[0.0004629551,0.0004872953,0.001080683,0.000002309248,0.0000324717,0.0001064754,0.000370139,0.000005192743,0.01626297,0.000007313288,0.9809434,0.0002387691],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9904068,0.002375596,0.0000116598,0.0003124119,0.0001511464,0.0002391539,0.004231323,0.000003517891,0.002268397],"genre_scores_gemma":[0.9941455,0.00018316,0.0001404112,0.001156476,0.00007190095,0.00003888788,0.002900351,0.00002708173,0.001336292],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.974356,"threshold_uncertainty_score":0.9100128,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009097277470821896,"score_gpt":0.199640945168311,"score_spread":0.1905436676974891,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}