{"id":"W4212905913","doi":"10.1101/2022.02.11.479922","title":"Intercontinental movement of H5 2.3.4.4 Highly Pathogenic Avian Influenza A(H5N1) to the United States, 2021","year":2022,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Influenza Virus Research Studies","field":"Medicine","cited_by":4,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Canadian Food Inspection Agency; U.S. Department of Agriculture","keywords":"Flyway; Waterfowl; Influenza A virus subtype H5N1; Highly pathogenic; Clade; Geography; Avian influenza virus; Lineage (genetic); Zoology; Anas; Biology; Virology; Ecology; Virus; Phylogenetics; Genetics; Gene; Habitat","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001981455,0.0001073989,0.00007232272,0.0004316542,0.0004443732,0.0003634113,0.00009775436,0.0002350621,0.001452391],"category_scores_gemma":[0.0003599437,0.00006336151,0.0001088853,0.0003875705,0.0001206614,0.0001532459,0.000267677,0.0002134972,0.0002339636],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003539037,"about_ca_system_score_gemma":0.0002567407,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.03906258,"about_ca_topic_score_gemma":0.08066304,"domain_scores_codex":[0.9999315,0.00001599922,0.000004140597,0.00001967157,0.00001457108,0.00001410722],"domain_scores_gemma":[0.999772,0.00002448993,0.00006611265,0.00001473275,0.00007575416,0.00004678446],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001378356,0.0000499853,0.9838726,0.00001270032,0.00004386666,0.0001179272,0.0004871117,0.0001659364,0.005540435,0.00006782555,0.001219312,0.008284448],"study_design_scores_gemma":[0.000001344333,0.00001683663,0.9988859,0.000003078989,0.000005009034,0.00002137474,0.0002404287,0.0001058428,0.0001698169,0.000008820294,0.0005404528,0.000001109914],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9977733,0.0001264264,0.00006902045,0.0001033026,0.00001754201,0.00000464118,0.0006903586,0.000004104394,0.001211328],"genre_scores_gemma":[0.9975393,0.00009644149,0.0001622713,0.00006712,0.00001151756,0.000006621961,0.001263661,0.000001615851,0.0008514274],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.03906258,"threshold_uncertainty_score":0.07767045,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03545200998608113,"score_gpt":0.2979180945853001,"score_spread":0.2624660845992189,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}