{"id":"W4212924812","doi":"10.1101/2022.02.17.480891","title":"The stationary phase-specific sRNA <i>fimR2</i> is a multifunctional regulator of bacterial motility, biofilm formation and virulence","year":2022,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Keio University; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung; Université de Sherbrooke; National Science Foundation","keywords":"Virulence; RNase P; Biology; Biofilm; Salmonella enterica; Effector; Secretion; Motility; Cell biology; Microbiology; rpoS; Regulator; Escherichia coli; Type three secretion system; Bacteria; RNA; Gene; Gene expression; Genetics; Biochemistry; Promoter","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001083247,0.0003064286,0.0001862788,0.0001210313,0.0001689881,0.0002950795,0.0001197763,0.0003076099,0.002629226],"category_scores_gemma":[0.0001123579,0.0001252869,0.0002796316,0.00008479592,0.0001811063,0.0001130801,0.0001749866,0.000418158,0.001261282],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002839491,"about_ca_system_score_gemma":0.0001830771,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005945876,"about_ca_topic_score_gemma":0.0005204994,"domain_scores_codex":[0.9999031,0.00001258382,0.000003581346,0.00002311419,0.00003610022,0.00002146223],"domain_scores_gemma":[0.9999313,0.000009323951,0.0000178327,0.000008953922,0.00001199201,0.00002049526],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003572068,0.000004922222,0.0002967227,0.00001552288,0.000002858577,0.00005740686,0.000006312054,0.00004486886,0.9982542,0.0001943403,0.0002024456,0.0008845787],"study_design_scores_gemma":[0.0000145907,0.0001215666,0.01526754,0.000007636056,0.000008772583,0.0007869342,0.00003481852,0.002206328,0.9702855,0.0002840243,0.0109717,0.00001065455],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9734555,0.003095696,0.0138834,0.0006606139,0.0001229711,0.00002356247,0.001146476,0.0005968943,0.007014853],"genre_scores_gemma":[0.9846383,0.0004916542,0.004829027,0.0001177029,0.0000403909,0.00001334761,0.002074685,0.00008281606,0.007712143],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002629226,"threshold_uncertainty_score":0.008795619,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01236555577921781,"score_gpt":0.2214014948618719,"score_spread":0.2090359390826541,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}