{"id":"W4213009837","doi":"10.1038/s41559-022-01661-x","title":"Supergene origin and maintenance in Atlantic cod","year":2022,"lang":"en","type":"article","venue":"Nature Ecology & Evolution","topic":"Genetic diversity and population structure","field":"Biochemistry, Genetics and Molecular Biology","cited_by":141,"is_retracted":false,"has_abstract":true,"ca_institutions":"Fisheries and Oceans Canada","funders":"Norges Forskningsråd; Universitetet i Oslo; National Science Council","keywords":"Supergene (geology); Biology; Gene; Haplotype; Adaptation (eye); Evolutionary biology; Genetics; Genome; Gene pool; Allele; Ecology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001305637,0.00007468525,0.00008571212,0.00006105565,0.0001398146,0.000003878502,0.00009354918,0.0002264207,0.000109172],"category_scores_gemma":[0.00003747411,0.00008170939,0.00002517793,0.0001112644,0.00004243715,0.000002349788,0.0001386467,0.0002845357,0.000004025268],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005237227,"about_ca_system_score_gemma":0.00004705318,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003396001,"about_ca_topic_score_gemma":0.0005033675,"domain_scores_codex":[0.9993449,0.00008821316,0.00009178422,0.0002389805,0.00007423691,0.0001618757],"domain_scores_gemma":[0.9997888,0.000006578708,0.00003579628,0.0001120061,0.00002778584,0.00002902012],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001062492,0.00002966043,0.9610701,0.000006373003,0.00001565458,0.000006942908,0.00004832429,0.001179015,0.02604412,0.001949775,0.00945171,0.0000921125],"study_design_scores_gemma":[0.0006354522,0.0001424943,0.9306131,0.00000121531,0.000009148044,0.00006676798,0.0001152686,0.0001388839,0.0003245476,0.0006063874,0.06724159,0.0001051402],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9978345,0.0008338934,0.00006465842,0.0004355236,0.0005142236,0.0001131172,0.00002173257,0.000006490127,0.0001758419],"genre_scores_gemma":[0.9985558,0.00005232425,0.0001955415,0.000309533,0.00006995159,0.00001075574,0.0002335772,0.000005112545,0.0005673519],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.05778988,"threshold_uncertainty_score":0.3332012,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.004008006138013237,"score_gpt":0.2168316775615547,"score_spread":0.2128236714235415,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}