{"id":"W4213020415","doi":"10.14309/ctg.0000000000000466","title":"Relationship Between Hepatic Gene Expression, Intestinal Microbiota, and Inferred Functional Metagenomic Analysis in NAFLD","year":2022,"lang":"en","type":"article","venue":"Clinical and Translational Gastroenterology","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":31,"is_retracted":false,"has_abstract":true,"ca_institutions":"The Wilson Centre; Public Health Ontario; University Health Network; University of Toronto; Toronto General Hospital; Canada Research Chairs","funders":"Canadian Institutes of Health Research","keywords":"Metagenomics; Medicine; Gene; Computational biology; Functional analysis; Gene expression; Bioinformatics; Internal medicine; Gastroenterology; Microbiology; Genetics; Biology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007116799,0.000438417,0.0005313618,0.001934513,0.0003285912,0.0005714671,0.000244668,0.0002358159,0.0007515412],"category_scores_gemma":[0.001175754,0.0001742673,0.000807684,0.001235668,0.0002032922,0.0002497987,0.0006646056,0.0002763747,0.0001111442],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003087134,"about_ca_system_score_gemma":0.0002436976,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001155798,"about_ca_topic_score_gemma":0.001630642,"domain_scores_codex":[0.9996206,0.0001305651,0.00002864654,0.0001078004,0.0000585485,0.00005395721],"domain_scores_gemma":[0.9995759,0.000200633,0.0001013425,0.00004751452,0.00003629294,0.00003825877],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001831889,0.0001050192,0.8903911,0.0005691948,0.002340983,0.0003192088,0.0002515438,0.004006096,0.07491313,0.0001742576,0.0002803328,0.02481736],"study_design_scores_gemma":[0.00002264615,0.0002637864,0.9693865,0.00006859721,0.001268274,0.0006052768,0.0003691902,0.01823069,0.007505482,0.0008827474,0.001367639,0.00002918692],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9901357,0.002460772,0.004101738,0.0001163613,0.00001026229,0.00001806572,0.002827817,0.00005921578,0.0002700652],"genre_scores_gemma":[0.9924141,0.0005468656,0.004093723,0.00004984657,0.000009565852,0.00003263937,0.002684436,0.00001529949,0.0001536075],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001934513,"threshold_uncertainty_score":0.003763795,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04536379695633182,"score_gpt":0.3112626388917772,"score_spread":0.2658988419354454,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}