{"id":"W4213141821","doi":"10.3390/microorganisms10020447","title":"Genotyping Canadian Cyclospora cayetanensis Isolates to Supplement Cyclosporiasis Outbreak Investigations","year":2022,"lang":"en","type":"article","venue":"Microorganisms","topic":"Parasitic Infections and Diagnostics","field":"Immunology and Microbiology","cited_by":8,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary; Health Canada; Ste. Anne's Hospital; BC Centre for Disease Control; University of Guelph; Public Health Ontario; St. John’s Health Sciences Centre; Public Health Agency of Canada","funders":"Public Health Agency of Canada; Centers for Disease Control and Prevention; British Columbia Centre for Disease Control; U.S. Department of Veterans Affairs","keywords":"Cyclospora cayetanensis; Genotyping; Outbreak; Epidemiology; Biology; Genotype; Cyclospora; Molecular epidemiology; Virology; Medicine; Microbiology; Genetics; Feces; Internal medicine; Gene; Cryptosporidium","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001302352,0.0007346233,0.0005045446,0.00185877,0.001670494,0.0009860726,0.0008601479,0.00032725,0.001741899],"category_scores_gemma":[0.003207841,0.0003007121,0.0003108007,0.002326473,0.0004082754,0.0002499643,0.0006016544,0.0004865558,0.0003226321],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.005989056,"about_ca_system_score_gemma":0.01003702,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.8621958,"about_ca_topic_score_gemma":0.9503042,"domain_scores_codex":[0.9980731,0.0002242539,0.0001094003,0.0002706753,0.001003865,0.0003187769],"domain_scores_gemma":[0.9972791,0.0001650456,0.0003329632,0.0001624513,0.00177227,0.0002881971],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0004520802,0.000207212,0.870608,0.0003272639,0.0001597801,0.0004926791,0.001905059,0.002516631,0.06400317,0.0003909047,0.007119274,0.05181798],"study_design_scores_gemma":[0.00005154031,0.0002702356,0.9550641,0.0001098601,0.0001618769,0.0005193972,0.001712128,0.004148514,0.01713033,0.0001287154,0.02065232,0.00005104732],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9747,0.0006272478,0.006556571,0.0006049334,0.00007718206,0.0005691566,0.008519371,0.0002342361,0.008111297],"genre_scores_gemma":[0.9610137,0.0007106518,0.02798131,0.0004161617,0.00002993185,0.0001236496,0.00682228,0.00005979681,0.002842516],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1378042,"threshold_uncertainty_score":0.2772315,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009394528550643174,"score_gpt":0.2197345318441735,"score_spread":0.2103400032935304,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}