{"id":"W4213141821","doi":"10.3390/microorganisms10020447","title":"Genotyping Canadian Cyclospora cayetanensis Isolates to Supplement Cyclosporiasis Outbreak Investigations","year":2022,"lang":"en","type":"article","venue":"Microorganisms","topic":"Parasitic Infections and Diagnostics","field":"Immunology and Microbiology","cited_by":8,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary; Health Canada; Ste. Anne's Hospital; BC Centre for Disease Control; University of Guelph; Public Health Ontario; St. John’s Health Sciences Centre; Public Health Agency of Canada","funders":"Public Health Agency of Canada; Centers for Disease Control and Prevention; British Columbia Centre for Disease Control; U.S. Department of Veterans Affairs","keywords":"Cyclospora cayetanensis; Genotyping; Outbreak; Epidemiology; Biology; Genotype; Cyclospora; Molecular epidemiology; Virology; Medicine; Microbiology; Genetics; Feces; Internal medicine; Gene; Cryptosporidium","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","sts","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0002331981,0.0002137155,0.0002364917,0.0003436943,0.001565031,0.00003577997,0.0002686953,0.0001060542,0.009822126],"category_scores_gemma":[0.000102355,0.000247015,0.0000791937,0.0004802186,0.00006435528,0.00005002224,0.0001861668,0.0003222214,0.001942478],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005309548,"about_ca_system_score_gemma":0.0004463171,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.09682556,"about_ca_topic_score_gemma":0.05075446,"domain_scores_codex":[0.998495,0.0001204069,0.000331226,0.0003747698,0.00004406312,0.0006345484],"domain_scores_gemma":[0.9992157,0.00009990442,0.00007162109,0.0003686326,0.00008672245,0.0001574791],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00002597217,0.0002701135,0.0293411,0.000009631398,0.0003112857,0.00006157564,0.004431818,0.001137861,0.8172613,0.008243655,0.1380413,0.0008643489],"study_design_scores_gemma":[0.0006543767,0.0002620967,0.01248481,0.000008782196,0.0001241179,0.0003465838,0.001744748,0.000005240792,0.1721908,0.0007538812,0.8109107,0.0005138345],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9877908,0.0004188354,0.0004588047,0.005347105,0.002192411,0.0005218838,0.001393142,0.0001341117,0.001742917],"genre_scores_gemma":[0.9926788,0.000009586565,0.001468691,0.003509503,0.00005670359,0.0001028194,0.0008373779,0.00003879774,0.001297783],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6728694,"threshold_uncertainty_score":0.9999982,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009394528550643174,"score_gpt":0.2197345318441735,"score_spread":0.2103400032935304,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}