{"id":"W4214568551","doi":"10.3389/fvets.2022.840416","title":"Rural Raccoons (Procyon lotor) Not Likely to Be a Major Driver of Antimicrobial Resistant Human Salmonella Cases in Southern Ontario, Canada: A One Health Epidemiological Assessment Using Whole-Genome Sequence Data","year":2022,"lang":"en","type":"article","venue":"Frontiers in Veterinary Science","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":4,"is_retracted":false,"has_abstract":true,"ca_institutions":"Queen's University; Public Health Ontario; University of Manitoba; Public Health Agency of Canada","funders":"Ontario Ministry of Agriculture, Food and Rural Affairs; Public Health Agency; Public Health Agency of Canada; Ontario Agri-Food Innovation Alliance; University of Guelph","keywords":"Salmonella; Epidemiology; Antimicrobial; Whole genome sequencing; Sequence (biology); Biology; Environmental health; Medicine; Genome; Microbiology; Genetics; Gene; Internal medicine; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002403954,0.0003069376,0.0002254927,0.0008131295,0.001559282,0.0007416974,0.0005289584,0.0002379692,0.001158106],"category_scores_gemma":[0.0005347637,0.0002269012,0.0001985189,0.00167038,0.0005401789,0.0001763437,0.0003963312,0.0002846609,0.0001154723],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.007075621,"about_ca_system_score_gemma":0.007364379,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.9779726,"about_ca_topic_score_gemma":0.9900652,"domain_scores_codex":[0.999699,0.00002698112,0.00001327356,0.00007645303,0.00008214739,0.0001022734],"domain_scores_gemma":[0.9993953,0.00003144256,0.0001793739,0.00002657833,0.0002107276,0.0001565551],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0000524615,0.00001662487,0.9953631,0.00002429693,0.00002319656,0.0001909598,0.0005853348,0.00005744162,0.001175351,0.00002891659,0.0002874462,0.002194785],"study_design_scores_gemma":[0.000002570009,0.00001933529,0.9983229,0.0000077433,0.0000102703,0.00007523679,0.001152507,0.00009597901,0.00004114015,0.000005141,0.0002642643,0.000002851596],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.998221,0.0001409529,0.00007340209,0.00007099924,0.000001440482,0.00001926255,0.000796256,0.00000443146,0.0006723099],"genre_scores_gemma":[0.9983016,0.0001909853,0.000154073,0.00003758211,0.000001940199,0.00000992976,0.0007273052,0.000001842474,0.0005746743],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02202737,"threshold_uncertainty_score":0.05133748,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1530463335264179,"score_gpt":0.3275989198379337,"score_spread":0.1745525863115159,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}