{"id":"W4214568551","doi":"10.3389/fvets.2022.840416","title":"Rural Raccoons (Procyon lotor) Not Likely to Be a Major Driver of Antimicrobial Resistant Human Salmonella Cases in Southern Ontario, Canada: A One Health Epidemiological Assessment Using Whole-Genome Sequence Data","year":2022,"lang":"en","type":"article","venue":"Frontiers in Veterinary Science","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":4,"is_retracted":false,"has_abstract":true,"ca_institutions":"Queen's University; Public Health Ontario; University of Manitoba; Public Health Agency of Canada","funders":"Ontario Ministry of Agriculture, Food and Rural Affairs; Public Health Agency; Public Health Agency of Canada; Ontario Agri-Food Innovation Alliance; University of Guelph","keywords":"Salmonella; Epidemiology; Antimicrobial; Whole genome sequencing; Sequence (biology); Biology; Environmental health; Medicine; Genome; Microbiology; Genetics; Gene; Internal medicine; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003425677,0.000272468,0.0007924666,0.0001505487,0.0006726233,0.00003431711,0.001974457,0.00007030945,0.000126394],"category_scores_gemma":[0.0001830973,0.0001614156,0.00006393061,0.001350287,0.0004873837,0.0002396361,0.001700077,0.0004515584,6.051552e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.002294803,"about_ca_system_score_gemma":0.00122855,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.8790854,"about_ca_topic_score_gemma":0.7071385,"domain_scores_codex":[0.9956989,0.000855972,0.0008962465,0.001037051,0.0005384079,0.0009733668],"domain_scores_gemma":[0.9986962,0.0002321737,0.0003898284,0.0003698035,0.0000500094,0.0002619942],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0003178526,0.0001800687,0.1521062,0.00001337298,0.000007653091,0.0002085164,0.0005767365,0.0005120921,0.8449692,0.00001827267,0.000628702,0.0004612947],"study_design_scores_gemma":[0.0003476772,0.002324463,0.9867232,0.00007607535,0.000009031203,0.0001675324,0.00393931,0.0006811722,0.00004661403,0.00004238397,0.005185671,0.0004568611],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9942333,0.0001099075,0.00003363228,0.002690336,0.0005065686,0.0005901467,0.001800889,0.00001835126,0.00001690704],"genre_scores_gemma":[0.9916027,0.000009210458,0.005928379,0.001983259,0.00004546313,0.00002610285,0.0003000178,0.000002829544,0.0001019952],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8449226,"threshold_uncertainty_score":0.6582336,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1530463335264179,"score_gpt":0.3275989198379337,"score_spread":0.1745525863115159,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}