{"id":"W4214812757","doi":"10.1093/infdis/jiac086","title":"Transcriptome Analysis of <i>Plasmodium falciparum</i> Isolates From Benin Reveals Specific Gene Expression Associated With Cerebral Malaria","year":2022,"lang":"en","type":"article","venue":"The Journal of Infectious Diseases","topic":"Malaria Research and Control","field":"Medicine","cited_by":24,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary","funders":"Agence Nationale de la Recherche","keywords":"Cerebral Malaria; Biology; Plasmodium falciparum; Malaria; Transcriptome; Gene; Gene expression; Parasite hosting; Plasmodium (life cycle); Gene expression profiling; Apicomplexa; Immunology; Virology; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0006408482,0.0001727737,0.0007445304,0.0004510423,0.0002467633,0.00002820755,0.0002626885,0.00004378145,0.002052993],"category_scores_gemma":[0.000184001,0.0001045739,0.00045372,0.0009484634,0.00009108628,0.0001200324,0.00005600932,0.0004825444,0.000001543711],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001770102,"about_ca_system_score_gemma":0.000195639,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001306894,"about_ca_topic_score_gemma":0.00003067966,"domain_scores_codex":[0.9974952,0.0006751129,0.000561121,0.0001465885,0.0008335754,0.0002884499],"domain_scores_gemma":[0.9980191,0.0004736767,0.0006062805,0.0003120479,0.000327344,0.000261525],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.01244258,0.00191522,0.5696225,0.00002308865,0.009802029,0.0001611692,0.0009669316,0.006522333,0.3948807,0.00009225376,0.003410686,0.0001604418],"study_design_scores_gemma":[0.009883119,0.003672889,0.9588372,0.000154273,0.01237513,0.0001203526,0.0007434039,0.0008603793,0.01234388,0.0005867129,0.0001855992,0.0002370621],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9950652,0.002315031,0.0006061549,0.0009384177,0.0001010591,0.0002719788,0.0005124567,0.00002265613,0.0001670063],"genre_scores_gemma":[0.9992749,0.000153565,0.00003284823,0.0001805703,0.000121316,0.00001388226,0.00008208672,0.00002270894,0.0001181009],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3892147,"threshold_uncertainty_score":0.9988593,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01108545869351651,"score_gpt":0.2402162024986512,"score_spread":0.2291307438051347,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}