{"id":"W4214835084","doi":"10.1016/j.chom.2022.02.001","title":"Diverse events have transferred genes for edible seaweed digestion from marine to human gut bacteria","year":2022,"lang":"en","type":"article","venue":"Cell Host & Microbe","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":84,"is_retracted":false,"has_abstract":false,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"National Institute of General Medical Sciences; National Institutes of Health; Agriculture and Agri-Food Canada; Joint Genome Institute; Deutsche Forschungsgemeinschaft; National Institute of Diabetes and Digestive and Kidney Diseases; U.S. Department of Energy; Office of Science; Howard Hughes Medical Institute","keywords":"Biology; Bacteria; Microbiome; Firmicutes; Bacteroides; Context (archaeology); Gut flora; Gene; Microbiology; Bacteroidetes; 16S ribosomal RNA; Genetics; Biochemistry","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0001519721,0.0001568749,0.0001890482,0.00003647562,0.0008249929,0.00001136305,0.000480841,0.00007530899,0.02995102],"category_scores_gemma":[0.00000452497,0.0001796435,0.00008653678,0.0000913171,0.00006958352,0.00007152702,0.0009191201,0.0001945813,0.0002712576],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001690295,"about_ca_system_score_gemma":0.00001065611,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005243856,"about_ca_topic_score_gemma":0.005310824,"domain_scores_codex":[0.9989398,0.0001833134,0.0001797417,0.0003214127,0.00006369831,0.0003120598],"domain_scores_gemma":[0.9994823,0.0000592723,0.00005074017,0.0003135482,0.000007394835,0.00008671427],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001638347,0.000220171,0.00889333,0.00000643223,0.00001221652,0.000001921178,0.0008950024,0.0001990473,0.9760069,0.000003211119,0.01274725,0.000850675],"study_design_scores_gemma":[0.002435186,0.001017308,0.2708575,0.000007849704,0.00009081668,0.000005690905,0.0008088645,0.0000533225,0.317242,0.0008978994,0.4059042,0.0006794455],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9969414,0.00001334495,0.0001347566,0.0002124486,0.0004080431,0.0005507107,0.0004134364,0.00003094178,0.001294903],"genre_scores_gemma":[0.9916894,0.000008860449,0.0007821758,0.0007370178,0.00006325841,0.0000846075,0.001616186,0.00002173785,0.004996731],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.658765,"threshold_uncertainty_score":0.9709358,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0160728554781243,"score_gpt":0.2365887051859068,"score_spread":0.2205158497077825,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}