{"id":"W4220656873","doi":"10.1099/ijsem.0.005284","title":"Phylogenomic and comparative genomic analyses of Leuconostocaceae species: identification of molecular signatures specific for the genera Leuconostoc, Fructobacillus and Oenococcus and proposal for a novel genus Periweissella gen. nov.","year":2022,"lang":"en","type":"article","venue":"INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":33,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Clade; Weissella; Leuconostoc; Evolutionary biology; Phylogenetics; Genetics; Zoology; Gene; Lactobacillus; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004100463,0.0001444702,0.0004138186,0.0001094578,0.000148468,0.00001674893,0.0002045181,0.00005799417,0.000003009135],"category_scores_gemma":[0.00004371605,0.0001103124,0.0001026897,0.00002941389,0.0003438532,0.000003692224,0.0001723322,0.00006160872,4.762504e-8],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003195077,"about_ca_system_score_gemma":0.00009608655,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000008735832,"about_ca_topic_score_gemma":0.000003907349,"domain_scores_codex":[0.9988346,0.00008346621,0.0006904272,0.0002166182,0.00006684489,0.0001080519],"domain_scores_gemma":[0.9985285,0.0001828869,0.0007653141,0.0001079367,0.0003852733,0.00003002441],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003522927,0.00004130066,0.0005345861,0.0004224695,0.0009785305,6.581885e-7,0.0005038791,0.001415345,0.99425,0.001318747,0.0001288673,0.00005331279],"study_design_scores_gemma":[0.01728433,0.009088085,0.1177767,0.0009082048,0.002852592,0.009754411,0.03352053,0.008373283,0.7763297,0.005575824,0.01667725,0.00185904],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9267693,0.06540745,0.005947298,0.0001948131,0.0002422504,0.0007567342,0.000676725,5.57757e-7,0.000004843034],"genre_scores_gemma":[0.9957134,0.001354644,0.002648091,0.0000349159,0.0001058392,0.00005795792,0.00004252245,0.000008762301,0.00003393825],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2179203,"threshold_uncertainty_score":0.4498411,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0404491919423236,"score_gpt":0.2813154896987463,"score_spread":0.2408662977564227,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}