{"id":"W4220681229","doi":"10.3389/fgene.2022.836841","title":"A microRNA Transcriptome-wide Association Study of Prostate Cancer Risk","year":2022,"lang":"en","type":"article","venue":"Frontiers in Genetics","topic":"Cancer-related molecular mechanisms research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"National Cancer Institute; National Human Genome Research Institute; Cancer Council Victoria; Medical Research Council; Canadian Institutes of Health Research; National Institutes of Health; U.S. Department of Defense; Pancreatic Cancer UK; European Commission; Rosetrees Trust; Cancer Research Institute; Royal Marsden NHS Foundation Trust; Prostate Cancer Foundation of Australia; National Institute for Health and Care Research; Prostate Cancer Foundation; National Cancer Research Institute; National Health and Medical Research Council; Cancer Research UK","keywords":"microRNA; Biology; Prostate cancer; Genome-wide association study; Expression quantitative trait loci; Transcriptome; Single-nucleotide polymorphism; Prostate; Genotyping; Computational biology; Genetics; Gene; Oncology; Cancer; Gene expression; Genotype; Medicine","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004532922,0.0001341986,0.0001967312,0.0001543308,0.0001041214,0.00001132296,0.0002941164,0.00009501829,0.00003294084],"category_scores_gemma":[0.00008327652,0.0001634461,0.00007405353,0.0003487959,0.00002400224,0.000001810602,0.0001718386,0.0003185034,5.163187e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002813158,"about_ca_system_score_gemma":0.0001829169,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002400818,"about_ca_topic_score_gemma":0.0002907333,"domain_scores_codex":[0.9982265,0.0003394227,0.0003014855,0.000365339,0.0004430675,0.0003242508],"domain_scores_gemma":[0.999331,0.000009858044,0.0001887517,0.0003215111,0.00009531395,0.00005356844],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0005398088,0.0007190131,0.6319309,0.00002975396,0.0004125849,0.00001150757,0.00233956,0.03958218,0.2894073,7.551248e-7,0.0286383,0.006388286],"study_design_scores_gemma":[0.01495856,0.007282205,0.08650564,0.00003363749,0.0004008155,0.000004345542,0.0158651,0.003873272,0.6480067,0.0004481015,0.2213209,0.001300663],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9882287,0.005806163,0.003996772,0.0001039884,0.0007801536,0.0008325992,0.0001748716,0.000006725482,0.00006996493],"genre_scores_gemma":[0.9950448,0.002221366,0.001307359,0.0001035405,0.00004681045,0.0003085194,0.0000481228,0.00004040248,0.0008790435],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5454253,"threshold_uncertainty_score":0.666514,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.006108242495642683,"score_gpt":0.2497973724841987,"score_spread":0.243689129988556,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}