{"id":"W4220751844","doi":"10.1101/gr.275900.121","title":"Global mapping of RNA homodimers in living cells","year":2022,"lang":"en","type":"article","venue":"Genome Research","topic":"RNA modifications and cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":15,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Medical Research Council; Medical Research Council Canada; Wellcome Trust","keywords":"Biology; RNA; Transcriptome; Small nuclear RNA; Genome; Gene; Genetics; RNA editing; Computational biology; Non-coding RNA; Cell biology; Gene expression","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008769106,0.00004434156,0.00006669723,0.00009374208,0.0001200705,0.000008955757,0.0002697126,0.00003004892,0.0001804596],"category_scores_gemma":[0.00002485437,0.00005032313,0.0000354933,0.0004678932,0.00006268588,0.000001343689,0.0003833967,0.0001180313,0.000005642639],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00009711959,"about_ca_system_score_gemma":0.0001702207,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002005614,"about_ca_topic_score_gemma":0.00002569639,"domain_scores_codex":[0.9989926,0.0001731974,0.0001267849,0.0002057256,0.0002497966,0.0002519567],"domain_scores_gemma":[0.9995917,0.00001272758,0.00002550295,0.0002689811,0.00006316594,0.00003789502],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00001681388,0.00006645415,0.002755289,0.00001643605,0.00001294203,0.000002439892,0.0001512334,0.001976617,0.9899101,0.00009335267,0.0005907313,0.00440755],"study_design_scores_gemma":[0.001548646,0.001360282,0.2793621,0.00005767385,0.00001087067,0.00002872519,0.0152529,0.0008831102,0.1776438,0.0008814659,0.5221082,0.0008621849],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9905236,0.00240428,0.0002088605,0.00008976407,0.00004336062,0.0001371557,0.00004149219,0.000002084139,0.00654936],"genre_scores_gemma":[0.998514,0.0002738372,0.0001751554,0.0000179488,0.00004194864,0.0000679156,0.00001573612,0.000006595551,0.000886854],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8122663,"threshold_uncertainty_score":0.2052118,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05075925847536869,"score_gpt":0.3400622389512768,"score_spread":0.2893029804759081,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}