{"id":"W4220762843","doi":"10.1093/gbe/evac036","title":"Strong Parallel Differential Gene Expression Induced by Hatchery Rearing Weakly Associated with Methylation Signals in Adult Coho Salmon (<i>O. kisutch</i>)","year":2022,"lang":"en","type":"article","venue":"Genome Biology and Evolution","topic":"Fish Ecology and Management Studies","field":"Environmental Science","cited_by":12,"is_retracted":false,"has_abstract":true,"ca_institutions":"Fisheries and Oceans Canada; Université Laval","funders":"Genome British Columbia; Government of Canada; Genome Canada","keywords":"Biology; Hatchery; Oncorhynchus; Gene; DNA methylation; Gene expression; Genetics; Methylation; Epigenome; Transcriptome; Regulation of gene expression; Fishery; Fish <Actinopterygii>","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003294026,0.0001232882,0.0001678435,0.0000432155,0.0004558325,0.000005944515,0.00009097398,0.0001070349,0.0003182798],"category_scores_gemma":[0.00002761357,0.000112009,0.00001767567,0.0001459438,0.0001053884,0.0001230883,0.0003143001,0.0001953755,0.000007929239],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000263176,"about_ca_system_score_gemma":0.000005485777,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003356278,"about_ca_topic_score_gemma":0.0006196992,"domain_scores_codex":[0.9988249,0.0002902982,0.00017671,0.0003408441,0.00009775351,0.0002694973],"domain_scores_gemma":[0.9997044,0.00004768542,0.0001262048,0.00008557277,0.000006243662,0.00002994657],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001496207,0.0001030723,0.641524,0.000002633917,0.00003735521,0.000001581541,0.0002402621,0.001529158,0.3557217,0.00005450855,0.0005176326,0.0001184958],"study_design_scores_gemma":[0.0006603197,0.0002694108,0.9969792,0.000004139242,0.00002095594,7.892066e-7,0.0002585867,0.0005223331,0.0004428989,0.0005918483,0.00009920853,0.0001503535],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9972219,0.00008120129,0.00147601,0.0002427719,0.000082863,0.0002555504,0.00001465681,0.00003188939,0.0005931256],"genre_scores_gemma":[0.9992114,0.00004524106,0.00009520152,0.0001000922,0.00001432506,0.0001205234,0.0001771344,0.00000700472,0.0002290469],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3554552,"threshold_uncertainty_score":0.4567593,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01073992471846243,"score_gpt":0.2139212493710427,"score_spread":0.2031813246525802,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}