{"id":"W4220762843","doi":"10.1093/gbe/evac036","title":"Strong Parallel Differential Gene Expression Induced by Hatchery Rearing Weakly Associated with Methylation Signals in Adult Coho Salmon (<i>O. kisutch</i>)","year":2022,"lang":"en","type":"article","venue":"Genome Biology and Evolution","topic":"Fish Ecology and Management Studies","field":"Environmental Science","cited_by":12,"is_retracted":false,"has_abstract":true,"ca_institutions":"Fisheries and Oceans Canada; Université Laval","funders":"Genome British Columbia; Government of Canada; Genome Canada","keywords":"Biology; Hatchery; Oncorhynchus; Gene; DNA methylation; Gene expression; Genetics; Methylation; Epigenome; Transcriptome; Regulation of gene expression; Fishery; Fish <Actinopterygii>","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006409783,0.0001509262,0.0001539766,0.0002056434,0.0001819126,0.0001849129,0.00007817638,0.0001375825,0.0009453465],"category_scores_gemma":[0.00009917136,0.0001166777,0.000201849,0.0001602843,0.0001759864,0.00009955718,0.0002492121,0.0002828106,0.0001490318],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002016911,"about_ca_system_score_gemma":0.0002352114,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003940188,"about_ca_topic_score_gemma":0.01096647,"domain_scores_codex":[0.9999031,0.000004922032,0.000005845308,0.00004789458,0.00001513823,0.00002313163],"domain_scores_gemma":[0.999898,0.0000135624,0.00003451454,0.000007158541,0.00002168434,0.00002500586],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001390981,0.0000114502,0.0193755,0.00002509648,0.0000179726,0.00005496873,0.00009422197,0.00002041897,0.9787526,0.00002757403,0.00005457452,0.00142665],"study_design_scores_gemma":[0.000005164859,0.0001770009,0.9333718,0.000004893316,0.0000311974,0.0001076281,0.000193777,0.0001814247,0.06527703,0.00002526043,0.000618378,0.000006372533],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9984302,0.0002501753,0.0002895557,0.00002610185,0.000007898423,0.000004443275,0.0005273491,0.00001206345,0.0004522611],"genre_scores_gemma":[0.9945778,0.000202473,0.0005751679,0.00009656826,0.000005903863,0.00002655551,0.001535438,0.00001193905,0.002968155],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003940188,"threshold_uncertainty_score":0.007834494,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01073992471846243,"score_gpt":0.2139212493710427,"score_spread":0.2031813246525802,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}