{"id":"W4220769405","doi":"10.1017/ice.2022.7","title":"Vancomycin-resistant <i>Enterococcus</i> sequence type 1478 spread across hospitals participating in the Canadian Nosocomial Infection Surveillance Program from 2013 to 2018","year":2022,"lang":"en","type":"article","venue":"Infection Control and Hospital Epidemiology","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":10,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto; University Health Network; Public Health Agency of Canada; University of Alberta","funders":"","keywords":"Enterococcus faecium; Bloodstream infection; Multilocus sequence typing; Vancomycin-resistant Enterococcus; Medicine; Infection control; Enterococcus; Whole genome sequencing; Vancomycin; Typing; Biology; Intensive care medicine; Genome; Microbiology; Staphylococcus aureus; Genotype; Genetics; Antibiotics; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0020701,0.0002913279,0.0007608484,0.0001346511,0.0007252812,0.00005255341,0.0001447694,0.0001742514,0.00008973157],"category_scores_gemma":[0.001868469,0.0002417873,0.0001410397,0.0004932456,0.0002417439,0.0001199126,0.00009109189,0.0006981703,0.00003399916],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005614898,"about_ca_system_score_gemma":0.0001987781,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.5361579,"about_ca_topic_score_gemma":0.6298403,"domain_scores_codex":[0.9966464,0.0009108863,0.0007627654,0.0006175336,0.0001883218,0.0008740773],"domain_scores_gemma":[0.9978184,0.001051735,0.000302835,0.0003721451,0.0001659256,0.0002889619],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0004718664,0.0001614487,0.9816511,0.00002184015,0.0000661352,0.00004309664,0.0005687433,0.0007022814,0.001001535,0.0001091902,0.008031601,0.007171213],"study_design_scores_gemma":[0.001549703,0.002313399,0.9225214,0.00004081605,0.00003334425,0.0000175839,0.0000826177,0.0006127338,0.00001874406,0.0003060946,0.07225,0.0002536016],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9824929,0.0003864616,0.0002477474,0.01282476,0.001328067,0.002147571,0.0002742378,0.00009550327,0.0002027259],"genre_scores_gemma":[0.9917365,0.0001172952,0.0002148783,0.00570695,0.0003324389,0.001760951,0.00007506859,0.0000266764,0.0000292577],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.09368238,"threshold_uncertainty_score":0.98598,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03551869206114681,"score_gpt":0.3478258449559939,"score_spread":0.3123071528948471,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}