{"id":"W4220787743","doi":"10.1093/molbev/msac066","title":"De Novo Assembly of 20 Chicken Genomes Reveals the Undetectable Phenomenon for Thousands of Core Genes on Microchromosomes and Subtelomeric Regions","year":2022,"lang":"en","type":"article","venue":"Molecular Biology and Evolution","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":102,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University","funders":"National Key Research and Development Program of China; University of Phayao; Northwest A and F University; National Natural Science Foundation of China","keywords":"Biology; Genome; Gene; Comparative genomics; Genetics; Housekeeping gene; DNA sequencing; Genomics; Genome evolution; Evolutionary biology; Genome size; Sequence assembly; Transcriptome","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002453652,0.0001091307,0.0001722048,0.00004485003,0.000229611,0.000003171121,0.0001075058,0.00006589089,0.000002943258],"category_scores_gemma":[0.00001722501,0.00008992139,0.00005805108,0.00007389332,0.0001918233,5.523631e-7,0.0001497546,0.00005349808,4.718653e-8],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001306166,"about_ca_system_score_gemma":0.00004623808,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002391452,"about_ca_topic_score_gemma":0.000009559257,"domain_scores_codex":[0.9993161,0.00007222544,0.0001584457,0.0002265897,0.00003733113,0.0001893156],"domain_scores_gemma":[0.9996051,0.00003241128,0.0001201194,0.0001746131,0.00004397033,0.000023852],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001201967,0.00003160854,0.02269517,0.00002307808,0.0001234168,2.362928e-7,0.0000819328,0.0001444708,0.971192,0.004723756,0.00004690615,0.0008172301],"study_design_scores_gemma":[0.003048382,0.007699251,0.08782148,0.00002713258,0.0003756608,0.0001671784,0.002598439,0.0003448732,0.8285488,0.05344016,0.01515667,0.0007719588],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9735023,0.02309064,0.002674186,0.0001465728,0.00005501016,0.0002409913,0.0001236872,0.000001666283,0.0001649258],"genre_scores_gemma":[0.998073,0.0009818967,0.0005757016,0.00009929013,0.00003676755,0.00007490862,0.00005181033,0.00001117318,0.00009546916],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1426432,"threshold_uncertainty_score":0.3666888,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01274690679880488,"score_gpt":0.254006271359394,"score_spread":0.2412593645605891,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}