{"id":"W4220787743","doi":"10.1093/molbev/msac066","title":"De Novo Assembly of 20 Chicken Genomes Reveals the Undetectable Phenomenon for Thousands of Core Genes on Microchromosomes and Subtelomeric Regions","year":2022,"lang":"en","type":"article","venue":"Molecular Biology and Evolution","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":102,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University","funders":"National Key Research and Development Program of China; University of Phayao; Northwest A and F University; National Natural Science Foundation of China","keywords":"Biology; Genome; Gene; Comparative genomics; Genetics; Housekeeping gene; DNA sequencing; Genomics; Genome evolution; Evolutionary biology; Genome size; Sequence assembly; Transcriptome","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003229764,0.0005666947,0.0003969152,0.0006289219,0.0003451196,0.0003976348,0.000264317,0.0002468306,0.0007800207],"category_scores_gemma":[0.0008194353,0.0003946226,0.0006423741,0.000578606,0.0001621641,0.0003452901,0.0004261666,0.0004469682,0.0003406534],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003572006,"about_ca_system_score_gemma":0.0003383036,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001841267,"about_ca_topic_score_gemma":0.005512481,"domain_scores_codex":[0.999816,0.00002137682,0.00001100443,0.00009772812,0.00003553561,0.00001839412],"domain_scores_gemma":[0.9996772,0.00009845529,0.00005198576,0.00006540329,0.00007134605,0.00003567515],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004140174,0.00004748442,0.02362612,0.0003940026,0.0002100032,0.0004294223,0.0003147759,0.004819829,0.9271818,0.001126715,0.0005896775,0.04084617],"study_design_scores_gemma":[0.0000995579,0.00077537,0.3977393,0.0001572442,0.00104324,0.002031157,0.0004750122,0.1003565,0.4337074,0.002992668,0.06053473,0.00008788586],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8935952,0.001859749,0.09747759,0.000109004,0.00006893541,0.00008020996,0.003914057,0.0008218303,0.002073393],"genre_scores_gemma":[0.7933343,0.001183739,0.1777232,0.0001553313,0.00002627472,0.0001275563,0.02416009,0.0004759656,0.002813518],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001841267,"threshold_uncertainty_score":0.003661036,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01274690679880488,"score_gpt":0.254006271359394,"score_spread":0.2412593645605891,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}