{"id":"W4220798106","doi":"10.1101/2022.03.30.486440","title":"Transcriptome of the coralline alga <i>Calliarthron tuberculosum</i> (Corallinales, Rhodophyta) reveals convergent evolution of a partial lignin biosynthesis pathway","year":2022,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Marine and coastal plant biology","field":"Earth and Planetary Sciences","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"Tula Foundation; University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; Hakai Institute; Tula Foundation","keywords":"Transcriptome; Biology; Gene; De novo transcriptome assembly; Metabolic pathway; Biosynthesis; Lignin; Botany; Computational biology; Genetics; Gene expression","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008562505,0.0001911537,0.0001800735,0.0002136556,0.0002328289,0.0004153829,0.00007541142,0.0001737425,0.0006465631],"category_scores_gemma":[0.000150402,0.0001233508,0.0002772522,0.000284639,0.0001306746,0.0001707358,0.0002577868,0.0002230639,0.0002887476],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001647144,"about_ca_system_score_gemma":0.0001710208,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002952091,"about_ca_topic_score_gemma":0.004049787,"domain_scores_codex":[0.9999248,0.000006158157,0.000004210253,0.00003604514,0.00001467218,0.00001416008],"domain_scores_gemma":[0.99991,0.00001812516,0.00002965678,0.00001352092,0.00001332431,0.00001526146],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001114044,0.000005499108,0.00661719,0.00004993879,0.00001367065,0.00005294226,0.0001306861,0.0002095665,0.9898581,0.00005157307,0.0001122144,0.002787279],"study_design_scores_gemma":[0.00001341126,0.0001304427,0.86005,0.00002960947,0.00006954416,0.0005504891,0.000573096,0.002666724,0.1293593,0.0001263134,0.00640884,0.00002235098],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9938571,0.0002994626,0.001172081,0.00005180049,0.000005153925,0.00000617133,0.003447542,0.00008756606,0.001073064],"genre_scores_gemma":[0.982493,0.0002944249,0.002845206,0.0001095186,0.000007103051,0.00001976763,0.01219834,0.00008468116,0.001947822],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002952091,"threshold_uncertainty_score":0.005869806,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01430477231891727,"score_gpt":0.1901955693343116,"score_spread":0.1758907970153944,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}