{"id":"W4220803774","doi":"10.1080/22221751.2022.2059402","title":"Persistence of an epidemic cluster of <i>Rhodotorula mucilaginosa</i> in multiple geographic regions in China and the emergence of a 5-flucytosine resistant clone","year":2022,"lang":"en","type":"article","venue":"Emerging Microbes & Infections","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":15,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Peking Union Medical College Hospital; Chinese Academy of Medical Sciences; National Natural Science Foundation of China","keywords":"Biology; Genotyping; Multilocus sequence typing; Molecular epidemiology; Genotype; Phylogenetic tree; Microbiology; Virology; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001387303,0.0001454016,0.0005267017,0.0004102632,0.0001936463,0.000002836729,0.0001440875,0.00004879964,0.00007790576],"category_scores_gemma":[0.0004464759,0.0001225625,0.0001901258,0.001169118,0.0006395415,0.00009544732,0.0001431104,0.0003986173,2.038637e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004616263,"about_ca_system_score_gemma":0.00009408851,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.007016389,"about_ca_topic_score_gemma":0.005822022,"domain_scores_codex":[0.9980553,0.0004103062,0.0007694131,0.0003175719,0.0002108029,0.000236587],"domain_scores_gemma":[0.9988238,0.0002561646,0.0002700317,0.0004975637,0.0001013995,0.00005108214],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0009678327,0.0007699537,0.7395703,0.0002732249,0.00004560936,0.00000495235,0.003746277,0.001140578,0.2527263,0.0004680215,0.0001185244,0.0001684436],"study_design_scores_gemma":[0.003985628,0.0005123315,0.981598,0.0003817715,0.0001358384,0.00004521626,0.00470917,0.002360216,0.005259717,0.0004157401,0.0004145987,0.0001818267],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9960716,0.001926357,0.0001721595,0.0009076934,0.00008752658,0.0005529594,0.00005060621,0.00001455265,0.0002164898],"genre_scores_gemma":[0.9987973,0.0006348717,0.0003388606,0.00007007879,0.0000123979,0.00005153671,0.00001564458,0.00001344602,0.00006584678],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2474665,"threshold_uncertainty_score":0.999596,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0156572362430069,"score_gpt":0.2585342065018657,"score_spread":0.2428769702588588,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}