{"id":"W4220813556","doi":"10.3389/fvets.2022.852475","title":"Persistent Circulation of Enterohemorrhagic Escherichia coli (EHEC) O157:H7 in Cattle Farms: Characterization of Enterohemorrhagic Escherichia coli O157:H7 Strains and Fecal Microbial Communities of Bovine Shedders and Non-shedders","year":2022,"lang":"en","type":"article","venue":"Frontiers in Veterinary Science","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":11,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"VetAgro Sup; Agence Nationale de la Recherche; Génome Québec; France AgriMer; McGill University","keywords":"Biology; Feces; Escherichia coli; Persistence (discontinuity); Microbiology; Herd; Lachnospiraceae; Campylobacter; Beef cattle; Veterinary medicine; Animal science; Bacteria","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0007583542,0.0002406729,0.0004515115,0.0004194392,0.0002082433,0.0000285729,0.0004969207,0.00008467923,0.0000140081],"category_scores_gemma":[0.00007590037,0.0002706209,0.00008227056,0.0007659455,0.001635905,0.00005946295,0.0008707512,0.000256047,8.789639e-8],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001161584,"about_ca_system_score_gemma":0.0002604898,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000266969,"about_ca_topic_score_gemma":0.0000473621,"domain_scores_codex":[0.9979377,0.0002743633,0.000527744,0.0004461925,0.0003969086,0.0004171398],"domain_scores_gemma":[0.9990906,0.00002258688,0.0003039899,0.0003584258,0.0001336076,0.0000908106],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0004097192,0.0002426625,0.07446899,0.000257618,0.00004011082,0.000005544628,0.00297971,0.000313857,0.9208871,0.000004806146,0.00002572181,0.0003642099],"study_design_scores_gemma":[0.003359153,0.006211637,0.8891903,0.0001849794,0.00005157378,0.00004743095,0.03370726,0.02353172,0.04282905,0.00001580268,0.0002348476,0.0006363138],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9977272,0.0004297403,0.0006971319,0.00009225051,0.0003070891,0.0005318234,0.0001157639,0.000005686835,0.00009337365],"genre_scores_gemma":[0.9961729,0.0003758563,0.003159067,0.00006408883,0.00001777662,0.00005005323,0.00009810861,0.00001926473,0.00004285401],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.878058,"threshold_uncertainty_score":0.9999746,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01558979798115729,"score_gpt":0.249041489557206,"score_spread":0.2334516915760487,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}