{"id":"W4220813556","doi":"10.3389/fvets.2022.852475","title":"Persistent Circulation of Enterohemorrhagic Escherichia coli (EHEC) O157:H7 in Cattle Farms: Characterization of Enterohemorrhagic Escherichia coli O157:H7 Strains and Fecal Microbial Communities of Bovine Shedders and Non-shedders","year":2022,"lang":"en","type":"article","venue":"Frontiers in Veterinary Science","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":11,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"VetAgro Sup; Agence Nationale de la Recherche; Génome Québec; France AgriMer; McGill University","keywords":"Biology; Feces; Escherichia coli; Persistence (discontinuity); Microbiology; Herd; Lachnospiraceae; Campylobacter; Beef cattle; Veterinary medicine; Animal science; Bacteria","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003423409,0.0002178843,0.0003166781,0.0005568012,0.0004607385,0.000614459,0.0001854113,0.0003491784,0.0004274193],"category_scores_gemma":[0.0004977603,0.0002193732,0.0001996751,0.0003589928,0.000411448,0.0003901257,0.0003054197,0.0002419517,0.0001137192],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003574022,"about_ca_system_score_gemma":0.0002296175,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005983823,"about_ca_topic_score_gemma":0.006974237,"domain_scores_codex":[0.9997031,0.0000438331,0.00002607068,0.00007215176,0.00006267435,0.00009207235],"domain_scores_gemma":[0.9996129,0.0000725976,0.00007565143,0.00002153936,0.00008629783,0.000131124],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0003965141,0.0001450818,0.9385355,0.0000276653,0.00004787292,0.0004219765,0.001012861,0.00004616112,0.05631046,0.00001323317,0.00002540388,0.003017314],"study_design_scores_gemma":[0.000003978127,0.0003080726,0.9975734,0.000003870849,0.00001852602,0.0002784313,0.0005811556,0.00007373511,0.001075648,0.000004974883,0.00007589318,0.000002323955],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9998876,0.000037855,0.00002039542,0.000001897929,5.773536e-7,0.000001026108,0.00002076478,2.715422e-7,0.00002965122],"genre_scores_gemma":[0.9995201,0.0000747798,0.00008223802,0.00001254393,0.000004599076,0.000003354625,0.0001837077,6.527482e-7,0.0001179039],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.005983823,"threshold_uncertainty_score":0.01189798,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01558979798115729,"score_gpt":0.249041489557206,"score_spread":0.2334516915760487,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}