{"id":"W4220838295","doi":"10.3201/eid2805.220318","title":"Intercontinental Movement of Highly Pathogenic Avian Influenza A(H5N1) Clade 2.3.4.4 Virus to the United States, 2021","year":2022,"lang":"en","type":"article","venue":"Emerging infectious diseases","topic":"Influenza Virus Research Studies","field":"Medicine","cited_by":218,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"U.S. Fish and Wildlife Service; Canadian Food Inspection Agency; U.S. Department of Agriculture","keywords":"Flyway; Waterfowl; Influenza A virus subtype H5N1; Clade; Highly pathogenic; Avian influenza virus; Influenza A virus; Lineage (genetic); Virology; Biology; Virus; Zoology; Geography; Phylogenetics; Ecology; Gene; Genetics; Habitat","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0002932715,0.0002858844,0.0004177836,0.0005844192,0.0006690793,0.00003480071,0.0002869228,0.00002975187,0.001400277],"category_scores_gemma":[0.0004601109,0.0002280094,0.0002695646,0.00130294,0.0001444349,0.00007950448,0.0008658916,0.0004259256,0.00008071679],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004636901,"about_ca_system_score_gemma":0.0001629012,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004342364,"about_ca_topic_score_gemma":0.0002810018,"domain_scores_codex":[0.9972323,0.0002984136,0.00056104,0.000401458,0.0009277659,0.000579046],"domain_scores_gemma":[0.9985239,0.0001607736,0.0001696612,0.0005989428,0.0002607528,0.0002860016],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"not_applicable","study_design_scores_codex":[0.003033751,0.004215919,0.7732379,0.0005739887,0.003072761,0.0003984504,0.01168245,0.04810637,0.04650036,0.000839031,0.08917387,0.01916514],"study_design_scores_gemma":[0.004548432,0.002407349,0.2617534,0.0001853215,0.0005799998,0.00002899956,0.004805007,0.001307719,0.003553777,0.0002600302,0.7199436,0.0006263559],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9933465,0.002168224,0.00006583707,0.001623119,0.0003744814,0.001068633,0.0007194062,0.0001360254,0.0004977572],"genre_scores_gemma":[0.9886136,0.0003004216,0.00002170345,0.009559484,0.0002188237,0.0006198238,0.0002151347,0.00005683347,0.000394141],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6307697,"threshold_uncertainty_score":0.9995126,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02491217362130226,"score_gpt":0.324252827726204,"score_spread":0.2993406541049017,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}