{"id":"W4220841394","doi":"10.1101/2022.03.29.486257","title":"Resolution of glycogen and glycogen-degrading activities reveals correlates of <i>Lactobacillus crispatus</i> dominance in a cohort of young African women","year":2022,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":3,"is_retracted":false,"has_abstract":true,"ca_institutions":"Alberta Children's Hospital; University of Calgary","funders":"Alberta Innovates; National Institutes of Health; Weston Family Foundation; Center for AIDS Research, University of Washington; University of Washington","keywords":"Lactobacillus crispatus; Glycogen; Biology; Metagenomics; Microbiome; Lactobacillus; Microbiology; Endocrinology; Biochemistry; Bacteria; Gene; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000208768,0.0002932109,0.0002610628,0.0006456092,0.0007993192,0.0005077241,0.0002219389,0.0003396393,0.001698293],"category_scores_gemma":[0.0007586917,0.0003004445,0.0002147974,0.0007953721,0.0002336951,0.0002577144,0.0005120253,0.0003148198,0.0002564442],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002583284,"about_ca_system_score_gemma":0.0002764991,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.009637083,"about_ca_topic_score_gemma":0.01255983,"domain_scores_codex":[0.9998487,0.0000264885,0.00001085417,0.00004321377,0.00002146651,0.00004923349],"domain_scores_gemma":[0.999793,0.00002711925,0.00009179401,0.00001267673,0.00002959756,0.00004591691],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001105647,0.00002368706,0.9945217,0.00002502649,0.00002118747,0.0002262376,0.0004434176,0.00001001982,0.002437278,0.00001477252,0.0000992227,0.00206682],"study_design_scores_gemma":[0.000002096312,0.00008274111,0.9975215,0.00001770126,0.00001714783,0.0004566199,0.001228816,0.00005934132,0.0002440488,0.0000125792,0.0003542708,0.000003157989],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9991985,0.0002316787,0.00003595934,0.00002822564,0.000002473938,0.0000104088,0.000277162,0.000001334288,0.0002141709],"genre_scores_gemma":[0.9991689,0.0002031787,0.0001143348,0.00003541359,0.000004060224,0.00001659365,0.0002285947,0.000002071113,0.0002269088],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.009637083,"threshold_uncertainty_score":0.019162,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01170561246637627,"score_gpt":0.2338890620109974,"score_spread":0.2221834495446211,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}