{"id":"W4220845331","doi":"10.3389/fcimb.2022.854122","title":"The Infant Gut Commensal Bacteroides dorei Presents a Generalized Transcriptional Response to Various Human Milk Oligosaccharides","year":2022,"lang":"en","type":"article","venue":"Frontiers in Cellular and Infection Microbiology","topic":"Probiotics and Fermented Foods","field":"Agricultural and Biological Sciences","cited_by":43,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Azrieli Foundation; Israel Science Foundation","keywords":"Bacteroides; Microbiology; Commensalism; Infant formula; Gut microflora; Gut flora; Biology; Immunology; Bacteria; Food science; Genetics","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006410191,0.0001415458,0.0001831252,0.00005382897,0.0009513415,0.00005838241,0.0001856152,0.00008553932,0.0001168068],"category_scores_gemma":[0.00001757628,0.00006560405,0.00007635789,0.0002280307,0.0001108814,0.0000439127,0.0001605513,0.0002481787,0.000002603124],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00008049596,"about_ca_system_score_gemma":0.000009811206,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004914408,"about_ca_topic_score_gemma":0.0002284075,"domain_scores_codex":[0.9985486,0.0005116419,0.0002682292,0.0002969661,0.00005999485,0.0003145281],"domain_scores_gemma":[0.9997143,0.00006374967,0.00006360035,0.00006759784,0.00002491961,0.0000658078],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0003888976,0.00009643006,0.02924599,0.000002030208,0.00003000602,0.000003703485,0.0001627292,0.00002748414,0.9633351,0.0001660934,0.004730502,0.001811028],"study_design_scores_gemma":[0.001277528,0.001419684,0.1450915,0.000009098492,0.00002401268,0.00008072591,0.0003181036,0.00016381,0.02053634,0.001592092,0.8290909,0.0003962137],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9963036,0.0005970341,0.0001657748,0.001509657,0.0008794377,0.000337294,0.0001367992,0.00002592235,0.00004451631],"genre_scores_gemma":[0.9984058,0.0001215181,0.0001893983,0.0005941308,0.00006698156,0.00007105892,0.0002204439,0.000001928323,0.0003287681],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9427988,"threshold_uncertainty_score":0.7317046,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01074595288619109,"score_gpt":0.2116600190599424,"score_spread":0.2009140661737513,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}