{"id":"W4220856086","doi":"10.1128/aem.02185-21","title":"Genetic Characteristics of the Transmissible Locus of Stress Tolerance (tLST) and tLST Harboring Escherichia coli as Revealed by Large-Scale Genomic Analysis","year":2022,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":17,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"Beef Cattle Research Council; Alberta Innovates Bio Solutions; Alberta Agriculture and Forestry","keywords":"Biology; Escherichia coli; Virulence; Plasmid; Phylogenetic tree; Locus (genetics); Genome; Genetics; Gene; Microbiology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007861746,0.0001670043,0.0001333675,0.0006070808,0.00009289818,0.0002518143,0.0001071809,0.0001708674,0.0006309493],"category_scores_gemma":[0.0003465647,0.00008763017,0.0001625168,0.0004795947,0.0001736445,0.0001010667,0.0002408274,0.0002778947,0.0001348523],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006595609,"about_ca_system_score_gemma":0.00008853758,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000480976,"about_ca_topic_score_gemma":0.0004718322,"domain_scores_codex":[0.9998798,0.00001784624,0.00001015847,0.00003261771,0.00002791796,0.00003169247],"domain_scores_gemma":[0.9997492,0.00006117069,0.00009123529,0.00002350988,0.00002530747,0.0000495364],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001911616,0.00005473114,0.02153638,0.0000274225,0.0000164086,0.000193765,0.00009341474,0.00007733829,0.9745201,0.0001011226,0.00001452304,0.003173528],"study_design_scores_gemma":[0.00001419248,0.0006645462,0.8329994,0.00001796087,0.00008618776,0.003045688,0.000592685,0.001369299,0.1593962,0.0002868572,0.001502547,0.00002435486],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9983619,0.00006924972,0.001007628,0.00001269863,0.000001867298,0.000007641652,0.0002888695,0.000007724919,0.0002423553],"genre_scores_gemma":[0.9979012,0.00006093726,0.0009419768,0.00001440459,0.000002251188,0.000007842028,0.000743012,0.000005162023,0.0003232385],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0006309493,"threshold_uncertainty_score":0.00211072,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.002323024279235411,"score_gpt":0.1806864169829753,"score_spread":0.1783633927037399,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}