{"id":"W4220881956","doi":"10.1128/mbio.02085-21","title":"Isolation and Characterization of a Novel Temperate Escherichia coli Bacteriophage, Kapi1, Which Modifies the O-Antigen and Contributes to the Competitiveness of Its Host during Colonization of the Murine Gastrointestinal Tract","year":2022,"lang":"en","type":"article","venue":"mBio","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":14,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"Canadian Institutes of Health Research; Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs; Government of Canada","keywords":"Bacteriophage; Escherichia coli; Microbiology; Host (biology); Isolation (microbiology); Colonization; Gastrointestinal tract; Biology; Antigen; Virology; Immunology; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002093966,0.0002764545,0.0001915242,0.0003253878,0.0001475251,0.00031177,0.0001452416,0.0002686565,0.0002949577],"category_scores_gemma":[0.0003675522,0.000114194,0.0001835406,0.0001615395,0.0001927065,0.0001990157,0.0002682804,0.0004363213,0.0002718766],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001020021,"about_ca_system_score_gemma":0.0002864179,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004908897,"about_ca_topic_score_gemma":0.0005480525,"domain_scores_codex":[0.9998733,0.00001995281,0.00001063831,0.00002465357,0.00003934635,0.00003221398],"domain_scores_gemma":[0.9997444,0.00006262124,0.0000517223,0.0000298328,0.00004605492,0.0000654309],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00002566722,0.00002599089,0.0006635229,0.0000138363,0.000001759107,0.00004676019,0.00002541667,0.00003372979,0.997919,0.00004111927,0.00001445513,0.001188616],"study_design_scores_gemma":[0.00001538068,0.0007080037,0.03841169,0.0000237521,0.0000291091,0.001378345,0.0002949623,0.001509396,0.9534218,0.0001469409,0.004040577,0.00002010349],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9940653,0.0003384697,0.004600999,0.00005889865,0.00001331539,0.00004004476,0.0002972353,0.00001744757,0.0005683099],"genre_scores_gemma":[0.9764541,0.0007144404,0.01779752,0.00008985689,0.00001505953,0.00005082127,0.001825151,0.00004312113,0.003009973],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0004908897,"threshold_uncertainty_score":0.001107395,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008369588380265665,"score_gpt":0.2059247120365132,"score_spread":0.1975551236562475,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}