{"id":"W4220881956","doi":"10.1128/mbio.02085-21","title":"Isolation and Characterization of a Novel Temperate Escherichia coli Bacteriophage, Kapi1, Which Modifies the O-Antigen and Contributes to the Competitiveness of Its Host during Colonization of the Murine Gastrointestinal Tract","year":2022,"lang":"en","type":"article","venue":"mBio","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":14,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"Canadian Institutes of Health Research; Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs; Government of Canada","keywords":"Bacteriophage; Escherichia coli; Microbiology; Host (biology); Isolation (microbiology); Colonization; Gastrointestinal tract; Biology; Antigen; Virology; Immunology; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001741813,0.00007966653,0.0001261731,0.00002013883,0.0003174476,0.00002614272,0.0001332531,0.00001423851,0.0001856107],"category_scores_gemma":[0.00004116711,0.00005132855,0.00002281922,0.0003004975,0.000113055,0.0001181241,0.0002569185,0.00008874623,8.002515e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003357086,"about_ca_system_score_gemma":0.0000132643,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002153896,"about_ca_topic_score_gemma":0.0001493413,"domain_scores_codex":[0.9993757,0.00008729701,0.0002247186,0.0001256142,0.0000953506,0.00009130001],"domain_scores_gemma":[0.9995376,0.00004650579,0.0002275807,0.0001199168,0.00005222087,0.00001616942],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00006340637,0.0000801226,0.06798855,0.00002130466,0.000007340471,1.030449e-7,0.0006603149,0.0003982374,0.9307203,0.00003244154,0.000001354791,0.00002652202],"study_design_scores_gemma":[0.0002239096,0.00006401786,0.8075936,0.00004024899,0.00001380236,0.00001595484,0.0001850158,0.001198477,0.1904619,6.263678e-7,0.0001648544,0.00003753438],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9977863,0.0000145205,0.0005214028,0.0009542278,0.00007619631,0.0004389677,0.0001800655,0.000004342603,0.00002394643],"genre_scores_gemma":[0.9996599,0.00002054821,0.00006997293,0.00005606487,0.000009834139,0.0000227575,0.00001786414,0.000007024133,0.0001360667],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7402583,"threshold_uncertainty_score":0.2441583,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008369588380265665,"score_gpt":0.2059247120365132,"score_spread":0.1975551236562475,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}