{"id":"W4220913882","doi":"10.1007/s10142-022-00844-w","title":"Small genetic variation affecting mRNA isoforms associated with marbling and meat color in beef cattle","year":2022,"lang":"en","type":"article","venue":"Functional & Integrative Genomics","topic":"Genetic and phenotypic traits in livestock","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of Guelph","funders":"","keywords":"Marbled meat; Biology; Gene isoform; Phenotype; Beef cattle; Genetics; Transcriptome; Alternative splicing; Exon; Single-nucleotide polymorphism; Genetic variation; RNA-Seq; Messenger RNA; Gene; Gene expression; Genotype","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002070473,0.0001661257,0.0001410073,0.00006593599,0.0002471301,0.00002235828,0.00009381935,0.00007689649,0.00006575769],"category_scores_gemma":[0.00009811738,0.0001456711,0.00003818713,0.000136067,0.00006275527,0.00000397541,0.0001158632,0.0002250366,0.000001858565],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000124261,"about_ca_system_score_gemma":0.0001696097,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00007202832,"about_ca_topic_score_gemma":0.0006815917,"domain_scores_codex":[0.9990301,0.0001076608,0.000186205,0.0003466647,0.0001209135,0.0002084651],"domain_scores_gemma":[0.9995727,0.00006876043,0.0001145066,0.0001130506,0.0000821298,0.00004888739],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"simulation_or_modeling","study_design_gemma":"observational","study_design_scores_codex":[0.003082381,0.0009501021,0.2160153,0.00004885191,0.001062908,0.0000084148,0.008924363,0.4457552,0.2998374,0.01242906,0.001311047,0.01057496],"study_design_scores_gemma":[0.001275417,0.001476454,0.9875838,0.00001446939,0.00004427655,0.00004107748,0.002005145,0.0008306809,0.002939602,0.001724494,0.001743912,0.0003206314],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9789546,0.000316876,0.01944738,0.0000597806,0.0002413297,0.0002773021,0.00006106211,0.000009624778,0.0006320293],"genre_scores_gemma":[0.9893214,0.00001296925,0.009115171,0.0001833143,0.000129144,0.00007936528,0.0002848314,0.00002396148,0.0008499075],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7715685,"threshold_uncertainty_score":0.5940296,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01398723683299039,"score_gpt":0.2064875576939776,"score_spread":0.1925003208609872,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}