{"id":"W4220930616","doi":"10.1016/j.vaccine.2022.02.081","title":"Recalibrated estimates of non-bacteremic and bacteremic pneumococcal community acquired pneumonia in hospitalized Canadian adults from 2010 to 2017 with addition of an extended spectrum serotype-specific urine antigen detection assay","year":2022,"lang":"en","type":"article","venue":"Vaccine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":12,"is_retracted":false,"has_abstract":true,"ca_institutions":"Saint John Regional Hospital; Ottawa Hospital; McMaster University; Mount Sinai Hospital; Vancouver General Hospital; Public Health Ontario; University of British Columbia; Izaak Walton Killam Health Centre; Nova Scotia Health Authority; Centre hospitalier universitaire de Québec; McGill University Health Centre; University of Ottawa; Public Health Agency of Canada; University of Toronto; Dalhousie University","funders":"Canadian Institutes of Health Research","keywords":"Medicine; Serotype; Pneumonia; Streptococcus pneumoniae; Community-acquired pneumonia; Bacteremia; Pneumococcal pneumonia; Sputum; Internal medicine; Context (archaeology); Urine; Immunology; Microbiology; Biology; Pathology; Antibiotics; Tuberculosis","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001892601,0.0009359675,0.0005165056,0.002721553,0.0008527999,0.001211369,0.001796555,0.0004712139,0.001000876],"category_scores_gemma":[0.006040066,0.0003607764,0.0009624739,0.003539971,0.0002978003,0.0005010484,0.0008209492,0.000710453,0.0002375972],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.02094052,"about_ca_system_score_gemma":0.018992,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.9812815,"about_ca_topic_score_gemma":0.9796347,"domain_scores_codex":[0.9972565,0.0002209174,0.0002545984,0.000331873,0.001573336,0.0003628775],"domain_scores_gemma":[0.9939883,0.0002166106,0.001073665,0.0001532773,0.004192606,0.0003755755],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0000961436,0.00001695019,0.9920822,0.0001041163,0.0001576901,0.00002525854,0.00008260462,0.0003379085,0.0001357278,0.00005595159,0.002159236,0.004746207],"study_design_scores_gemma":[0.000006694911,0.00002858025,0.9968433,0.00005308102,0.00007624723,0.00005231622,0.0001248756,0.001120058,0.0001402495,0.00001194955,0.001534279,0.00000832285],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9190549,0.00716313,0.001955454,0.00100575,0.0001361977,0.0002159125,0.06337262,0.0002101686,0.006885966],"genre_scores_gemma":[0.9786021,0.001555401,0.001602657,0.0002104642,0.00005604711,0.00005490883,0.0172046,0.0000140828,0.0007000041],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02094052,"threshold_uncertainty_score":0.1519347,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01066372020990537,"score_gpt":0.2353104903060244,"score_spread":0.224646770096119,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}