{"id":"W4220947876","doi":"10.1101/2022.03.23.485530","title":"Bacteriophages Playing Nice: Lysogenic bacteriophage replication stable in the human gut microbiota","year":2022,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University","funders":"","keywords":"Prophage; Lysogenic cycle; Lytic cycle; Biology; Bacteriophage; Genetics; Population; Temperateness; Microbiology; Virus; Gene; Escherichia coli","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001105602,0.0003264532,0.0004183518,0.000759465,0.0007573748,0.00204337,0.0003281629,0.0007267503,0.00168308],"category_scores_gemma":[0.002230615,0.0002862323,0.0003033833,0.0007161782,0.0007582635,0.0007326926,0.0007872588,0.001028964,0.0005949388],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005414111,"about_ca_system_score_gemma":0.000488069,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001210094,"about_ca_topic_score_gemma":0.0008399132,"domain_scores_codex":[0.9994521,0.000102242,0.00002996383,0.0002101904,0.0001228834,0.00008275701],"domain_scores_gemma":[0.9986714,0.0002568399,0.000427432,0.0001261049,0.0002999571,0.0002182851],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.002707887,0.0001341989,0.2692796,0.001481198,0.0002260341,0.001166086,0.002459701,0.0007334193,0.5903214,0.002841998,0.00648522,0.1221632],"study_design_scores_gemma":[0.00007369484,0.001321779,0.7325656,0.0007784725,0.0003575567,0.005436649,0.003022239,0.003478221,0.177431,0.008567307,0.06670734,0.0002600551],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9594945,0.02522267,0.00776741,0.002791977,0.0004769093,0.00004770041,0.001594749,0.0002724657,0.002331653],"genre_scores_gemma":[0.9894831,0.003009511,0.004358476,0.0006818374,0.0002818008,0.00002728572,0.0008094588,0.00007217896,0.001276336],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00204337,"threshold_uncertainty_score":0.005847096,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0146951548785605,"score_gpt":0.2410315496484678,"score_spread":0.2263363947699072,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}