{"id":"W4220992320","doi":"10.3389/fcimb.2022.836699","title":"Microbiome Characterization of Infected Diabetic Foot Ulcers in Association With Clinical Outcomes: Traditional Cultures Versus Molecular Sequencing Methods","year":2022,"lang":"en","type":"article","venue":"Frontiers in Cellular and Infection Microbiology","topic":"Diabetic Foot Ulcer Assessment and Management","field":"Medicine","cited_by":42,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canadian Institute for Advanced Research","funders":"Technion-Israel Institute of Technology; German-Israeli Foundation for Scientific Research and Development; Seerave Foundation; Canadian Institute for Advanced Research; Israel Cancer Research Fund","keywords":"Metagenomics; Microbiome; Microbiology; 16S ribosomal RNA; Bacteroides; Biology; Diabetic foot; Staphylococcus aureus; Diabetic foot ulcer; Microbiological culture; Anaerobic bacteria; Staphylococcus; Medicine; Bacteria; Diabetes mellitus; Internal medicine; Bioinformatics; Gene; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001059739,0.0003471088,0.000426795,0.001424905,0.0002170147,0.0009815819,0.0002217381,0.0003639064,0.0009249873],"category_scores_gemma":[0.002039798,0.0001471152,0.0003238274,0.001138024,0.0002579073,0.0004237827,0.0007403331,0.0003568563,0.0001534241],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002260067,"about_ca_system_score_gemma":0.0001884214,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005632382,"about_ca_topic_score_gemma":0.001021625,"domain_scores_codex":[0.9991589,0.0002298577,0.0001064863,0.000169737,0.0001993656,0.000135634],"domain_scores_gemma":[0.9986411,0.0002790621,0.0006923749,0.0000485243,0.0001913891,0.0001474798],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0005780584,0.0001364221,0.9648487,0.0001710862,0.0001726762,0.0001577556,0.0001872519,0.000135865,0.01456898,0.000034479,0.0001409357,0.01886784],"study_design_scores_gemma":[0.000013193,0.0004116476,0.9925234,0.00009177605,0.0001400436,0.0008996152,0.0007011548,0.00136615,0.003178903,0.0001238725,0.0005361218,0.00001418722],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.996964,0.001429769,0.0008892191,0.00006086923,0.00001171935,0.00001678921,0.0003256441,0.000005690812,0.0002961279],"genre_scores_gemma":[0.9971467,0.0006623261,0.001569725,0.00005084685,0.00002486031,0.00002492108,0.0003999781,0.000003351239,0.0001174511],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001424905,"threshold_uncertainty_score":0.005604506,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02265042731172032,"score_gpt":0.3061255533378949,"score_spread":0.2834751260261745,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}