{"id":"W4221008807","doi":"10.3390/genes13040572","title":"Recently Integrated Alu Elements in Capuchin Monkeys: A Resource for Cebus/Sapajus Genomics","year":2022,"lang":"en","type":"article","venue":"Genes","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"ca_institutions":"Alberta Children's Hospital; University of Calgary; Université de Montréal","funders":"National Institutes of Health","keywords":"Alu element; Biology; Cebidae; Primate; Evolutionary biology; Retrotransposon; Phylogenetic tree; Phylogenetics; Locus (genetics); Zoology; Genome; Genetics; Ecology; Gene; Human genome; Transposable element","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002306896,0.0001633465,0.0001659263,0.00006293599,0.000196619,0.00001524227,0.0002694902,0.00005436308,0.00002421267],"category_scores_gemma":[0.00002892214,0.0001727097,0.00008495984,0.0001104292,0.00002968184,4.342535e-7,0.0003156899,0.0000777329,0.000002219424],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005730668,"about_ca_system_score_gemma":0.00008190494,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00009523093,"about_ca_topic_score_gemma":0.0002021168,"domain_scores_codex":[0.9988508,0.00007187569,0.0002786989,0.000389489,0.00009261334,0.0003165485],"domain_scores_gemma":[0.9995306,0.00001308681,0.00008860848,0.0002810213,0.00004157345,0.00004513707],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0003428211,0.0001327087,0.01398084,0.00001922904,0.0001338471,0.000003513258,0.0005047309,0.003647069,0.9512093,0.00004579597,0.008098085,0.02188203],"study_design_scores_gemma":[0.0009873266,0.0003382302,0.001887692,0.000002568475,0.00001756575,0.000006413723,0.001327195,0.0002930904,0.06889145,0.0001925839,0.9258108,0.0002450511],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9933794,0.004995826,0.0001400175,0.0002063697,0.000235846,0.00045788,0.000214143,0.000004691282,0.0003657982],"genre_scores_gemma":[0.9930668,0.0008499575,0.003135466,0.000516989,0.0002112438,0.0004484844,0.000445008,0.00004569087,0.001280335],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9177127,"threshold_uncertainty_score":0.7042895,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01448871566816734,"score_gpt":0.2378916022634569,"score_spread":0.2234028865952896,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}