{"id":"W4221009252","doi":"10.1101/2022.03.03.482896","title":"Development and evaluation of a loop-mediated isothermal amplification (LAMP) method for detection of the potato wart pathogen <i>Synchytrium endobioticum</i>","year":2022,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Plant Pathogens and Resistance","field":"Agricultural and Biological Sciences","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture Food and Rural Development","funders":"","keywords":"Loop-mediated isothermal amplification; Primer (cosmetics); Biology; Pathogen; Solanum tuberosum; Molecular biology; Horticulture; Microbiology; DNA; Chemistry; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002082651,0.0002251009,0.0003226749,0.00003373343,0.0002197396,0.00002894353,0.0002994006,0.0002113099,0.00001956368],"category_scores_gemma":[0.0002381073,0.000106835,0.0001160645,0.0003707379,0.00005386312,0.00004131977,0.0001997744,0.0001913305,5.860682e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001164062,"about_ca_system_score_gemma":0.0001675996,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002726533,"about_ca_topic_score_gemma":0.00003795777,"domain_scores_codex":[0.9979583,0.0003375079,0.0004888427,0.0005144,0.0004836911,0.0002172585],"domain_scores_gemma":[0.9983187,0.000201724,0.0006994565,0.000212783,0.0005053534,0.0000619563],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0000426741,0.00007003211,0.001047585,0.0001366167,0.0000453425,3.208084e-7,0.00001260005,0.00004948153,0.9982851,0.00003783997,0.000005772287,0.0002666812],"study_design_scores_gemma":[0.0002186016,0.00003562426,0.2611947,0.0000817025,0.0001191449,2.24538e-8,0.00001727822,0.001204999,0.7327614,0.000002394944,0.004158067,0.0002061111],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9955761,0.0008263731,0.0006298979,0.00008714335,0.0003185059,0.001269682,0.001253332,0.00003654484,0.000002402781],"genre_scores_gemma":[0.9945777,0.00006791791,0.00490017,0.00003616628,0.00007681514,0.0003271629,0.000005401593,0.00000555736,0.000003102143],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2655237,"threshold_uncertainty_score":0.4356606,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02439441656693031,"score_gpt":0.227278665942407,"score_spread":0.2028842493754767,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}