{"id":"W4221023376","doi":"10.1186/s13100-021-00259-7","title":"A beginner’s guide to manual curation of transposable elements","year":2022,"lang":"en","type":"article","venue":"Mobile DNA","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":184,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University","funders":"Uppsala Universitet","keywords":"Set (abstract data type); Computer science; Transposable element; Process (computing); Field (mathematics); Data science; World Wide Web; Genome; Biology; Genetics; Programming language","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.01079723,0.00257157,0.002309535,0.008892275,0.002967219,0.003259517,0.004836687,0.002486856,0.1342692],"category_scores_gemma":[0.04010667,0.002442423,0.001803777,0.00641761,0.001659864,0.003610165,0.0044138,0.005225844,0.1604765],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001159469,"about_ca_system_score_gemma":0.006082357,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00526219,"about_ca_topic_score_gemma":0.01315241,"domain_scores_codex":[0.9918131,0.002567802,0.001586071,0.001096833,0.002566009,0.000370193],"domain_scores_gemma":[0.9668511,0.01357178,0.001427369,0.004905261,0.01186446,0.00137997],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0002178128,0.0001970278,0.0005551288,0.003113164,0.00006449166,0.0004732301,0.001152658,0.0004651054,0.01264665,0.002445774,0.7618052,0.2168637],"study_design_scores_gemma":[0.00003553502,0.00005364181,0.0009412093,0.0007151733,0.00002068056,0.0006979548,0.0002082594,0.0007606663,0.002946906,0.004226269,0.9893112,0.0000825266],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.003546539,0.009355415,0.7385913,0.008051443,0.00561387,0.005667081,0.08588871,0.1017353,0.04155033],"genre_scores_gemma":[0.003243045,0.004297066,0.9003238,0.002796042,0.0008191941,0.004015918,0.04142474,0.01674039,0.02633977],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.1342692,"threshold_uncertainty_score":0.4491752,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01032922884814474,"score_gpt":0.2429598067322316,"score_spread":0.2326305778840869,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}