{"id":"W4221023376","doi":"10.1186/s13100-021-00259-7","title":"A beginner’s guide to manual curation of transposable elements","year":2022,"lang":"en","type":"article","venue":"Mobile DNA","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":184,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University","funders":"Uppsala Universitet","keywords":"Set (abstract data type); Computer science; Transposable element; Process (computing); Field (mathematics); Data science; World Wide Web; Genome; Biology; Genetics; Programming language","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00009907869,0.00004777364,0.00006800695,0.000007232669,0.0001642028,0.000007926037,0.0001302292,0.00001233923,0.003571882],"category_scores_gemma":[0.000005044093,0.00002168572,0.00004056385,0.0002289725,0.000007186209,0.00003456028,0.00004732749,0.00003099151,0.00002126348],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001945505,"about_ca_system_score_gemma":0.00000590251,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00009908098,"about_ca_topic_score_gemma":0.000332405,"domain_scores_codex":[0.9994059,0.00003211957,0.0001620508,0.0001279398,0.0001612676,0.0001107216],"domain_scores_gemma":[0.999843,0.0000228498,0.00003676677,0.00003500977,0.00002379904,0.00003859101],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00002795322,0.0002926883,0.008892547,0.000004457174,0.00001348564,0.000001855272,0.0005146491,0.001284561,0.9325526,0.0007924252,0.005444503,0.05017823],"study_design_scores_gemma":[0.0002077415,0.001148917,0.02454486,0.000004009062,0.00001332594,0.000003582159,0.0009267622,0.0003810321,0.02873941,0.000557757,0.9433216,0.0001509619],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9973469,0.00002287623,0.000007338801,0.0007768197,0.00008655658,0.0002658305,0.0002276667,0.00001769934,0.001248262],"genre_scores_gemma":[0.9977152,0.000002625313,0.0001777048,0.0001791602,0.00006210097,0.0002104941,0.000141306,4.130503e-7,0.001511026],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9378771,"threshold_uncertainty_score":0.997339,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01032922884814474,"score_gpt":0.2429598067322316,"score_spread":0.2326305778840869,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}