{"id":"W4221024969","doi":"10.5281/zenodo.6364420","title":"Characterization of Atypical Shiga Toxin Gene Sequences and Description of Stx2j, a New Subtype","year":2022,"lang":"en","type":"article","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canadian Food Inspection Agency; Health Canada","funders":"European Commission","keywords":"Shiga toxin; Gene; Toxin; Biology; Computational biology; Genetics; Escherichia coli","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002125359,0.0003052907,0.0003041328,0.0005429226,0.0003285216,0.0006182292,0.0002059491,0.000346117,0.0006633404],"category_scores_gemma":[0.0004828597,0.000164067,0.0003847764,0.0009162216,0.0001695442,0.0001868499,0.0002473746,0.0003932932,0.0002910286],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000302535,"about_ca_system_score_gemma":0.00054383,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01109757,"about_ca_topic_score_gemma":0.0178985,"domain_scores_codex":[0.9998067,0.00001069577,0.00002454163,0.00005033714,0.0000725554,0.00003514722],"domain_scores_gemma":[0.9996191,0.00003134816,0.000102095,0.00004628876,0.0001297327,0.00007131987],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0005051793,0.00008109023,0.123912,0.0001870147,0.00005495102,0.000911087,0.0007654469,0.000311669,0.8622468,0.0001586767,0.0004310797,0.01043496],"study_design_scores_gemma":[0.00004937109,0.0004792213,0.9091825,0.00008783638,0.0001235243,0.003623698,0.001359615,0.003106765,0.0682082,0.0001213705,0.01362622,0.00003158893],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9968329,0.0002501367,0.0007774985,0.00003025181,0.000007942666,0.00002727721,0.001500894,0.00001358596,0.0005595533],"genre_scores_gemma":[0.9770547,0.0004386269,0.005404406,0.0001381275,0.00002091502,0.00004995591,0.01482655,0.00004371921,0.002022903],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01109757,"threshold_uncertainty_score":0.022066,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03425557658463204,"score_gpt":0.2421116627200088,"score_spread":0.2078560861353768,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}