{"id":"W4221049439","doi":"10.1038/s41586-021-04332-2","title":"Petabase-scale sequence alignment catalyses viral discovery","year":2022,"lang":"en","type":"article","venue":"Nature","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":529,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Klaus Tschira Stiftung; Russian Science Foundation; University of British Columbia; Diamond V; Saint Petersburg State University; Agence Nationale de la Recherche; Ministerio de Economía y Competitividad","keywords":"Computational biology; Biology; Sequence (biology); RNA; RNA polymerase; RNA virus; Polymerase; Gene; Virology; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00006021034,0.00008693057,0.00007100355,0.00001527248,0.0002793968,0.00003809065,0.0002078937,0.00009010427,0.007371159],"category_scores_gemma":[0.000004727875,0.00007988113,0.0000675191,0.0001154296,0.00005213127,0.0003342324,0.0003762146,0.0009536948,0.0001984434],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002813883,"about_ca_system_score_gemma":0.000008576359,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004271152,"about_ca_topic_score_gemma":0.0001322957,"domain_scores_codex":[0.9992876,0.00003067409,0.00008744592,0.0002304644,0.0001927545,0.0001710377],"domain_scores_gemma":[0.9997107,0.00001182286,0.000040442,0.0001929363,0.000002157501,0.00004196274],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0000137253,0.00008342724,0.0008782307,0.000001883727,0.000006854914,0.00002184908,0.000168579,0.0003245006,0.9678379,0.0000437926,0.02984027,0.0007790112],"study_design_scores_gemma":[0.0002624396,0.0001056019,0.04726336,0.000006912715,0.00003302051,0.0001386641,0.0004157009,0.00008964026,0.1018952,0.000112747,0.8493294,0.0003473238],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9913867,0.0001090048,0.00003951975,0.001098529,0.000662171,0.0001129172,0.0002542115,0.00003464004,0.006302362],"genre_scores_gemma":[0.9875765,0.000008260089,0.0002815035,0.001974294,0.00004819424,0.00002812759,0.00006356564,0.00000948961,0.01001001],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8659427,"threshold_uncertainty_score":0.9935362,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008684529880429719,"score_gpt":0.2560376262919017,"score_spread":0.247353096411472,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}