{"id":"W4221073022","doi":"10.3389/fvets.2022.832633","title":"Runs of Homozygosity Uncover Potential Functional-Altering Mutation Associated With Body Weight and Length in Two Duroc Pig Lines","year":2022,"lang":"en","type":"article","venue":"Frontiers in Veterinary Science","topic":"Genetic and phenotypic traits in livestock","field":"Biochemistry, Genetics and Molecular Biology","cited_by":18,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Natural Science Foundation of Guangdong Province","keywords":"Runs of Homozygosity; Biology; Inbreeding; Genetics; Single-nucleotide polymorphism; Genetic diversity; Population; Allele; Selective breeding; Selection (genetic algorithm); Loin; Litter; Gene; Animal science; Genotype; Ecology","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000284086,0.00009109866,0.0001129505,0.0001456436,0.000136108,0.00001113353,0.0001714765,0.00002293782,0.000008567759],"category_scores_gemma":[0.000030458,0.00009136964,0.000017034,0.0003517039,0.0002745825,0.00001571902,0.0001918915,0.00009444927,9.135784e-8],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004101434,"about_ca_system_score_gemma":0.0001414472,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000326126,"about_ca_topic_score_gemma":0.00001379929,"domain_scores_codex":[0.9990714,0.00007025883,0.0001490123,0.0003153299,0.0002126637,0.0001813063],"domain_scores_gemma":[0.9997162,0.000006614996,0.00007659726,0.0001301679,0.0000342754,0.00003613185],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.001767646,0.0005337959,0.230768,0.00004693516,0.00005723237,0.00006165705,0.0008908995,0.1197186,0.6407083,0.0003503234,0.0002990374,0.004797645],"study_design_scores_gemma":[0.001063709,0.001753616,0.9900804,0.0000164889,0.000008607182,0.00007736735,0.0003136818,0.004042571,0.001824289,0.0004447092,0.0002084965,0.0001661067],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9837239,0.0002174573,0.01527238,0.00002008554,0.0004811524,0.0001149888,0.00001857585,0.000004122857,0.0001473902],"genre_scores_gemma":[0.9899268,0.00001171703,0.009847052,0.00002993569,0.0000252295,0.00001299297,0.00002740358,0.000006484009,0.0001124016],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7593124,"threshold_uncertainty_score":0.3725946,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007942150058027064,"score_gpt":0.2262269046980122,"score_spread":0.2182847546399851,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}