{"id":"W4221080452","doi":"10.1371/journal.pone.0264439","title":"Diversity of blaCTX-M-1-carrying plasmids recovered from Escherichia coli isolated from Canadian domestic animals","year":2022,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":16,"is_retracted":false,"has_abstract":true,"ca_institutions":"Public Health Agency of Canada; University of Guelph","funders":"Medical Research Council; Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"Plasmid; Biology; Escherichia coli; Beef cattle; Nanopore sequencing; Multilocus sequence typing; Genetic diversity; Genome; Veterinary medicine; Microbiology; Genetics; Gene; Genotype; Population","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001582129,0.0003128132,0.0002745347,0.001527062,0.001050411,0.0006269562,0.0002639196,0.0002688271,0.0008054479],"category_scores_gemma":[0.0005726601,0.0001495187,0.0002217978,0.001989902,0.0004112339,0.0001148456,0.0003393173,0.0002255812,0.0001256315],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001981354,"about_ca_system_score_gemma":0.00223428,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.5647064,"about_ca_topic_score_gemma":0.7424055,"domain_scores_codex":[0.9996124,0.00001231176,0.00002104356,0.00009188927,0.0001439164,0.0001183908],"domain_scores_gemma":[0.9996599,0.00003603607,0.00006443107,0.00002180144,0.0001454847,0.00007227756],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0006898937,0.0001186275,0.6194368,0.0003232414,0.0001260954,0.00109237,0.003429827,0.0004451864,0.3439656,0.0002730975,0.0006580592,0.02944117],"study_design_scores_gemma":[0.000004697462,0.00009994447,0.9867164,0.00001985665,0.00006068295,0.000649536,0.001117569,0.0001865174,0.00875252,0.00001327437,0.002366951,0.00001199889],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.997524,0.0002475322,0.0001794113,0.0000231857,0.000002241513,0.00002144928,0.00115817,0.000008848023,0.0008352021],"genre_scores_gemma":[0.9940705,0.0005163219,0.001133597,0.00004561005,0.000002993053,0.00001413942,0.003105552,0.000007545123,0.001103731],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4352936,"threshold_uncertainty_score":0.8757143,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01997199736628554,"score_gpt":0.207454389099093,"score_spread":0.1874823917328075,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}