{"id":"W4221086258","doi":"10.1186/s12870-022-03473-4","title":"ROS1-mediated decrease in DNA methylation and increase in expression of defense genes and stress response genes in Arabidopsis thaliana due to abiotic stresses","year":2022,"lang":"en","type":"article","venue":"BMC Plant Biology","topic":"Plant Molecular Biology Research","field":"Agricultural and Biological Sciences","cited_by":42,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Chinese Academy of Sciences; Directorate for Biological Sciences; Institute of Genetics; National Natural Science Foundation of China; Department of Finance of Jilin Province; People's Government of Jilin Province","keywords":"Biology; DNA methylation; Arabidopsis thaliana; Arabidopsis; Gene; Gene silencing; Genetics; DNA demethylation; Gene expression; Regulation of gene expression; Abiotic stress; Promoter; Cell biology; Mutant","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001019292,0.0001474702,0.000325813,0.0002035887,0.00006696027,0.000009779116,0.0001866156,0.0001478084,0.00004741855],"category_scores_gemma":[0.0008618833,0.00007505844,0.00002291258,0.0004851701,0.0001012968,0.00003698011,0.0003277273,0.0001591423,0.000001148791],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003331817,"about_ca_system_score_gemma":0.00004219813,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002933272,"about_ca_topic_score_gemma":0.02291493,"domain_scores_codex":[0.9968281,0.001984305,0.0003192129,0.0004360327,0.0001056862,0.0003266132],"domain_scores_gemma":[0.9978482,0.001842734,0.00008504286,0.00006994167,0.00001933877,0.0001347947],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.001640662,0.00007216607,0.4387431,0.000008161156,0.000002041597,0.00009276013,0.00006405108,0.00002539986,0.5577723,0.00000717101,0.000005664824,0.001566479],"study_design_scores_gemma":[0.0004827552,0.0003924376,0.921917,0.00004120058,0.000003335022,0.00007304359,0.0004281801,0.0001753159,0.07608185,0.00009317613,0.0001541828,0.0001575798],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9954762,0.001893937,7.657873e-7,0.0002637951,0.00002374355,0.0003579792,0.001968145,0.00001053417,0.000004829476],"genre_scores_gemma":[0.9986754,0.000272239,0.00008472098,0.00006485169,0.00001227783,0.00006157887,0.0008211411,0.000001421982,0.000006361199],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4831738,"threshold_uncertainty_score":0.9949144,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02684726273107218,"score_gpt":0.2552484859423055,"score_spread":0.2284012232112334,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}