{"id":"W4221094935","doi":"10.3390/vaccines10030473","title":"Comparative Reverse Vaccinology of Piscirickettsia salmonis, Aeromonas salmonicida, Yersinia ruckeri, Vibrio anguillarum and Moritella viscosa, Frequent Pathogens of Atlantic Salmon and Lumpfish Aquaculture","year":2022,"lang":"en","type":"article","venue":"Vaccines","topic":"Aquaculture disease management and microbiota","field":"Immunology and Microbiology","cited_by":29,"is_retracted":false,"has_abstract":true,"ca_institutions":"Memorial University of Newfoundland","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Yersinia ruckeri; Microbiology; Aeromonas salmonicida; Vibrio anguillarum; Antigen; Reverse vaccinology; Aeromonas; Virology; Vibrio; Epitope; Fishery; Bacteria; Genetics; Rainbow trout","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.000202365,0.0003715983,0.000846043,0.0002204869,0.0003081256,0.00001503031,0.0002985939,0.0001942671,0.0005067468],"category_scores_gemma":[0.00002614396,0.0003284508,0.0001454843,0.0003286448,0.0001952349,0.00009605159,0.000551066,0.0003114717,0.00001595481],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004482428,"about_ca_system_score_gemma":0.00004481109,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005233632,"about_ca_topic_score_gemma":0.0001619616,"domain_scores_codex":[0.9980574,0.0003195526,0.000560151,0.0005712538,0.00007596557,0.000415656],"domain_scores_gemma":[0.9989474,0.00009001055,0.0004267787,0.0003745934,0.0001098868,0.00005127561],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0007805986,0.0004271668,0.05786436,0.0002581319,0.0008623263,0.00006711359,0.004699958,0.00001890465,0.8916011,0.0009968486,0.04184797,0.0005755469],"study_design_scores_gemma":[0.01258714,0.003164124,0.5777777,0.0002752782,0.002494834,0.001764663,0.02800922,0.0000777267,0.1530102,0.0007088664,0.2178291,0.002301086],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9783537,0.01935064,0.00001034534,0.0005390475,0.000331527,0.0005763287,0.0003380046,0.00004810995,0.000452302],"genre_scores_gemma":[0.9976243,0.0005527536,0.0001540883,0.000159504,0.00002717002,0.00002236055,0.000499644,0.00002548175,0.0009346349],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7385908,"threshold_uncertainty_score":0.9999167,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01227863165950282,"score_gpt":0.2307581971792717,"score_spread":0.2184795655197689,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}