{"id":"W4221137947","doi":"10.1089/fpd.2021.0110","title":"PulseNet International Survey on the Implementation of Whole Genome Sequencing in Low and Middle-Income Countries for Foodborne Disease Surveillance","year":2022,"lang":"en","type":"article","venue":"Foodborne Pathogens and Disease","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":36,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Manitoba; Public Health Agency of Canada","funders":"Centers for Disease Control and Prevention; National Institutes of Health; U.S. Department of Health and Human Services","keywords":"Preparedness; Disease surveillance; Subtyping; Medicine; Developing country; Public health; Environmental health; Business; Economic growth; Political science; Computer science; Nursing","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008010754,0.0001232302,0.0001735436,0.00002221597,0.0002052951,0.00002917594,0.0001504534,0.00001954568,0.0001347605],"category_scores_gemma":[0.0001920369,0.00005716072,0.00005528361,0.0001376073,0.00006944387,0.00004293491,0.0001205071,0.00005848525,7.02467e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005163599,"about_ca_system_score_gemma":0.00004507789,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003344144,"about_ca_topic_score_gemma":0.0009882634,"domain_scores_codex":[0.9987532,0.0003038072,0.0002687078,0.0003103372,0.0001504933,0.0002134866],"domain_scores_gemma":[0.9989462,0.0006273329,0.000129009,0.00007275431,0.00005620583,0.0001684536],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0005577732,0.00004411839,0.9953498,0.00003685585,0.00001728124,0.000007940991,0.00008805732,0.00009277202,0.0023227,0.0006803389,0.00004204884,0.0007602629],"study_design_scores_gemma":[0.0002966834,0.0002035643,0.9967437,0.00001619355,0.000009356392,9.540611e-7,0.0004655259,0.0002737712,0.00001706462,0.001152884,0.000701989,0.0001183146],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.982565,0.0007177623,0.000003432438,0.002191378,0.00008600926,0.0003799812,0.01403851,0.000009832794,0.000008061346],"genre_scores_gemma":[0.9977844,0.0001102175,0.000007433924,0.0005582833,0.00006651688,0.0001337511,0.00132031,0.000001920887,0.00001719393],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01521933,"threshold_uncertainty_score":0.2330946,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03342888664821388,"score_gpt":0.2597958657859931,"score_spread":0.2263669791377793,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}