{"id":"W4221142374","doi":"10.1093/nar/gkac331","title":"BioSimulators: a central registry of simulation engines and services for recommending specific tools","year":2022,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"Gene Regulatory Network Analysis","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Victoria","funders":"National Institute of Biomedical Imaging and Bioengineering; National Institute of General Medical Sciences; National Institutes of Health","keywords":"Python (programming language); Computer science; SBML; Reuse; Software engineering; Software; Interface (matter); Systems engineering; Programming language; World Wide Web; XML; Operating system; Engineering","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.02329271,0.00429022,0.005043215,0.01254873,0.002746149,0.01120885,0.008421132,0.004030695,0.04182733],"category_scores_gemma":[0.05187701,0.002869025,0.003958785,0.007960071,0.001213951,0.01138755,0.01006049,0.005310684,0.06802723],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.003601811,"about_ca_system_score_gemma":0.01101949,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.007890357,"about_ca_topic_score_gemma":0.005563357,"domain_scores_codex":[0.9897154,0.002406161,0.002416605,0.002032046,0.002630515,0.0007992185],"domain_scores_gemma":[0.9543542,0.007988289,0.002939436,0.01917554,0.01087607,0.004666474],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00258785,0.0006546816,0.01387243,0.001408531,0.000624321,0.0005251972,0.0006285285,0.0213412,0.005691833,0.04643818,0.7648448,0.1413823],"study_design_scores_gemma":[0.0008216747,0.0001712186,0.002694822,0.0006916299,0.0002537449,0.0002655218,0.0002496886,0.1356392,0.01837785,0.03386881,0.8064042,0.0005617639],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"software","genre_gemma":"software","genre_scores_codex":[0.003923549,0.0008567959,0.2736728,0.001541672,0.0006961315,0.001126601,0.06164112,0.6357363,0.02080494],"genre_scores_gemma":[0.04567654,0.002507061,0.3636259,0.002158154,0.0005101922,0.003445758,0.4492561,0.1187669,0.01405349],"genre_candidate":"software","genre_consensus":"software","teacher_disagreement_score":0.04182733,"threshold_uncertainty_score":0.1399263,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04485659951256313,"score_gpt":0.3306183979115027,"score_spread":0.2857617983989396,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}