{"id":"W4223428216","doi":"10.1093/g3journal/jkac087","title":"An update of the salmon louse (<i>Lepeophtheirus salmonis</i>) reference genome assembly","year":2022,"lang":"en","type":"article","venue":"G3 Genes Genomes Genetics","topic":"Parasite Biology and Host Interactions","field":"Environmental Science","cited_by":9,"is_retracted":false,"has_abstract":true,"ca_institutions":"BC Centre for Aquatic Health Sciences; University of Victoria","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Lepeophtheirus; Biology; Genome; Subspecies; Sequence assembly; Evolutionary biology; Chromosome; Genetics; Fishery; Zoology; Gene; Transcriptome; Aquaculture; Fish <Actinopterygii>","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0002392019,0.0001999071,0.0001930072,0.00004421944,0.0006211054,0.00002004782,0.00111288,0.00007778606,0.003020273],"category_scores_gemma":[0.000002029794,0.0001659752,0.000102001,0.0003217529,0.0002383709,0.00007256443,0.0007382752,0.0002554393,0.0002874362],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000154418,"about_ca_system_score_gemma":0.00004786944,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001230688,"about_ca_topic_score_gemma":0.0001589931,"domain_scores_codex":[0.9982892,0.0002801203,0.0003263338,0.0004215516,0.0003204857,0.0003623109],"domain_scores_gemma":[0.9987188,0.00003585218,0.0002230168,0.0009008707,0.00001738098,0.0001040625],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00005548957,0.0002616351,0.2192508,0.000004996247,0.00004493833,0.000006498463,0.000583255,0.03625964,0.6043139,0.00008615709,0.0001816394,0.138951],"study_design_scores_gemma":[0.0002012525,0.0003309383,0.3246948,0.00000150208,0.00005290925,0.00007927676,0.0002882163,0.0005312351,0.02255813,0.0002941885,0.6506386,0.0003290297],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9750274,0.01996387,0.00008779296,0.0001551164,0.0004223032,0.0002640918,0.0002141813,0.00003169893,0.003833567],"genre_scores_gemma":[0.9918072,0.005362253,0.0007881577,0.0005281885,0.00005491045,0.00005099019,0.00005040072,0.00002655658,0.001331312],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.650457,"threshold_uncertainty_score":0.9978911,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01976650025849991,"score_gpt":0.2925856342953439,"score_spread":0.272819134036844,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}