{"id":"W4223443426","doi":"10.1111/evo.14490","title":"Genomic changes underlying repeated niche shifts in an adaptive radiation","year":2022,"lang":"en","type":"article","venue":"Evolution","topic":"Genetic diversity and population structure","field":"Biochemistry, Genetics and Molecular Biology","cited_by":18,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Victoria","funders":"National Human Genome Research Institute; Biotechnology and Biological Sciences Research Council; National Research Council Canada; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung; National Science Foundation","keywords":"Biology; Adaptive radiation; Ecological niche; Adaptation (eye); Niche; Evolutionary biology; Genetic architecture; Genome; Local adaptation; Ecology; Genetics; Gene; Habitat; Phylogenetics; Population; Phenotype","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001183118,0.00005901905,0.00004927706,0.00006268491,0.0001472383,0.000007892462,0.00008209695,0.00005523146,0.00006100822],"category_scores_gemma":[0.000009254138,0.00007310334,0.0000191097,0.0001053067,0.00001237937,0.000003844527,0.00007189023,0.00007293862,0.000003040586],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000896667,"about_ca_system_score_gemma":0.00003489522,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00009749133,"about_ca_topic_score_gemma":0.0003154376,"domain_scores_codex":[0.9994164,0.0001202806,0.00007369084,0.0001954215,0.00008818544,0.000106019],"domain_scores_gemma":[0.9997706,0.000002221569,0.00005212598,0.0001297914,0.00001838176,0.00002687104],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0005022124,0.00008633979,0.1537145,0.000008493316,0.00003646702,0.000005063942,0.00151332,0.06627405,0.7638257,0.001307441,0.001188904,0.0115375],"study_design_scores_gemma":[0.0005504541,0.0004364335,0.9870817,0.000001669565,0.000009886002,0.000004200272,0.001064638,0.002521013,0.001535251,0.0005493856,0.006092049,0.0001533169],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9980845,0.0003773462,0.0009214961,0.0001048457,0.0001691094,0.0001189069,0.00002156592,0.00001017709,0.0001920239],"genre_scores_gemma":[0.9990542,0.00001136514,0.0001900231,0.0001087931,0.00006190508,0.00001112314,0.0003998443,0.000006114045,0.0001566204],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8333672,"threshold_uncertainty_score":0.2981068,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03094750055425039,"score_gpt":0.2562491904566567,"score_spread":0.2253016899024063,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}