{"id":"W4223487876","doi":"10.1101/2022.04.07.487584","title":"Genome-wide analysis reveals PhoP regulates pathogenicity in <i>Riemerella anatipestifer</i>","year":2022,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Microbial infections and disease research","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Ministry of Agriculture","funders":"Huazhong Agricultural University; Universidade de Macau","keywords":"Biology; Gene; Regulon; Genetics; Virulence; Genome; Transcriptome; RNA-Seq; Pathogenicity island; Gene expression","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001086582,0.0002813677,0.0003400143,0.0004159838,0.0002199326,0.0003753896,0.0001540896,0.0002440924,0.0009088996],"category_scores_gemma":[0.0001055504,0.0001675896,0.0004663297,0.0003987323,0.0001278736,0.0001341,0.0002777017,0.0004048279,0.0002691921],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00020851,"about_ca_system_score_gemma":0.0001684866,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002196138,"about_ca_topic_score_gemma":0.002959927,"domain_scores_codex":[0.9998416,0.0000103917,0.000008026848,0.00008128885,0.00002658932,0.00003212154],"domain_scores_gemma":[0.9998749,0.00001925849,0.00005705286,0.000009123235,0.00001856159,0.00002098303],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002083243,0.00001985848,0.01688271,0.00009019837,0.00004107481,0.0001164795,0.00004675201,0.0001343465,0.9801967,0.00002502269,0.0001756957,0.00206283],"study_design_scores_gemma":[0.0000187965,0.0002184308,0.9089858,0.00002167927,0.000143483,0.0006576757,0.0003655517,0.00204562,0.08440486,0.00005841257,0.003057523,0.00002222118],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9952641,0.0005066929,0.0006002619,0.00004174066,0.000005947355,0.000008958973,0.003096107,0.00006587879,0.0004104256],"genre_scores_gemma":[0.9906855,0.0003179407,0.001121651,0.00008600363,0.000006788194,0.00002286703,0.0067184,0.00003251579,0.001008431],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002196138,"threshold_uncertainty_score":0.004366696,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01351995229454019,"score_gpt":0.2386644490522606,"score_spread":0.2251444967577204,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}