{"id":"W4223503935","doi":"10.14745/ccdr.v48i04a03","title":"The need for linked genomic surveillance of SARS-CoV-2","year":2022,"lang":"en","type":"article","venue":"Canada Communicable Disease Report","topic":"SARS-CoV-2 and COVID-19 Research","field":"Medicine","cited_by":23,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia; Public Health Agency of Canada; McMaster University; Simon Fraser University","funders":"Natural Sciences and Engineering Research Council of Canada; Michael G. DeGroote Institute for Infectious Disease Research, McMaster University; McMaster University","keywords":"Pandemic; Data sharing; Public health; Openness to experience; Identification (biology); Disease; Epidemiology; Data science; Coronavirus disease 2019 (COVID-19); Biology; Medicine; Computer science; Infectious disease (medical specialty)","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":true,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.01135001,0.0004008141,0.0006562415,0.004000067,0.001341442,0.004805582,0.001503637,0.001179824,0.004266109],"category_scores_gemma":[0.03366086,0.0003783844,0.0005393652,0.005614877,0.0008758557,0.003625993,0.003051977,0.003137163,0.0009996421],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.004064451,"about_ca_system_score_gemma":0.01759287,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.2233938,"about_ca_topic_score_gemma":0.2986985,"domain_scores_codex":[0.9921986,0.003084094,0.0007960971,0.0009490816,0.002585578,0.0003864251],"domain_scores_gemma":[0.9512921,0.01613597,0.005678398,0.005467798,0.01842761,0.00299813],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0003621682,0.0002282091,0.3506434,0.001613019,0.0005534407,0.0005863681,0.002482024,0.004869731,0.006344691,0.02363616,0.1158213,0.4928596],"study_design_scores_gemma":[0.0001457254,0.000260346,0.2549997,0.005383711,0.0003593667,0.001326147,0.005757494,0.009638729,0.005041947,0.04264992,0.6741254,0.0003115333],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"commentary","genre_gemma":"empirical","genre_scores_codex":[0.2227509,0.03788365,0.103806,0.3844637,0.0063249,0.001726722,0.1188438,0.003202706,0.1209977],"genre_scores_gemma":[0.5592677,0.03280601,0.2602033,0.04475368,0.00520027,0.001005019,0.0873271,0.0005651425,0.008871831],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.2233938,"threshold_uncertainty_score":0.444187,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05409742966766688,"score_gpt":0.3370151202857014,"score_spread":0.2829176906180345,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}