{"id":"W4223539970","doi":"10.1101/2022.04.11.487771","title":"Exploring the mobilome and resistome of <i>Enterococcus faecium</i> in a One Health context across two continents","year":2022,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada; McMaster University; Discovery Centre; Public Health Agency of Canada; Dalhousie University; Simon Fraser University; University of Saskatchewan","funders":"Natural Sciences and Engineering Research Council of Canada; Genome Canada; Canadian Institutes of Health Research; Simon Fraser University; Government of Canada; Cisco Systems","keywords":"Enterococcus faecium; Mobile genetic elements; Resistome; Biology; Antibiotic resistance; Context (archaeology); Genetics; Genome; Horizontal gene transfer; Virulence; Evolutionary biology; Computational biology; Gene; Antibiotics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002802853,0.0002352856,0.000376335,0.0008872587,0.0005207771,0.00105097,0.0001789587,0.0003536658,0.001369157],"category_scores_gemma":[0.0006015544,0.0001159422,0.0003232438,0.001363268,0.0003129233,0.000210655,0.0007066884,0.0003608369,0.0003413406],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005391057,"about_ca_system_score_gemma":0.0006224924,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.02480352,"about_ca_topic_score_gemma":0.02916759,"domain_scores_codex":[0.9998049,0.00002581731,0.000009685815,0.00006923226,0.00003497909,0.00005544108],"domain_scores_gemma":[0.9996626,0.0000602556,0.00009130172,0.00003254088,0.0000899821,0.00006334324],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.001085464,0.000131353,0.4248445,0.0004775448,0.0004112913,0.0009101239,0.003160858,0.0009494962,0.5283385,0.0007580809,0.003016231,0.0359166],"study_design_scores_gemma":[0.00001269053,0.0001426862,0.9731016,0.0000713388,0.00009406112,0.0005696532,0.002948636,0.0006698168,0.009334275,0.0002759726,0.01275552,0.00002372655],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9940333,0.0005473742,0.0005167999,0.0001961481,0.000009655925,0.000008475517,0.003639535,0.00001881779,0.001029952],"genre_scores_gemma":[0.9876338,0.0004887673,0.002169926,0.0002847589,0.00001113433,0.00001231631,0.008485806,0.00003927599,0.0008741258],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02480352,"threshold_uncertainty_score":0.04931831,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06109620417175132,"score_gpt":0.2912092834193039,"score_spread":0.2301130792475525,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}