{"id":"W4223628422","doi":"10.1101/2022.04.11.487918","title":"Phylotranscriptomics Reveals the Reticulate Evolutionary History of a Widespread Diatom Species Complex","year":2022,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Diatoms and Algae Research","field":"Materials Science","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Continental (Canada)","funders":"Horizon 2020 Framework Programme; European Commission","keywords":"Biology; Phylogenetic tree; Clade; Monophyly; Evolutionary biology; Lineage (genetic); Reticulate; Phylogenetics; Intraspecific competition; Coalescent theory; Species complex; Morphometrics; Zoology; Gene; Botany; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002644511,0.0001564146,0.0002519447,0.00116387,0.0004496623,0.0006225458,0.0002109311,0.0003542688,0.0009518185],"category_scores_gemma":[0.000429773,0.0001987007,0.0001857996,0.0008902178,0.0003453182,0.0004318101,0.0004912752,0.0004446001,0.0003103909],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002911584,"about_ca_system_score_gemma":0.0001323632,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008782319,"about_ca_topic_score_gemma":0.001907536,"domain_scores_codex":[0.9997874,0.00002032268,0.00001236681,0.0001117295,0.00004078108,0.00002737549],"domain_scores_gemma":[0.9996064,0.0001029011,0.0001213561,0.00004799128,0.00006240379,0.00005898886],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001633243,0.00002622513,0.072259,0.00006142614,0.00005468331,0.00009435355,0.0004204373,0.0002759131,0.91766,0.0002790976,0.0001083991,0.008597136],"study_design_scores_gemma":[0.000006092898,0.00005968851,0.9787466,0.00001143072,0.00003448394,0.0002554012,0.0003642407,0.002375834,0.01584634,0.0004126632,0.001875989,0.00001122288],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9966477,0.0002961929,0.001657144,0.00004784576,0.000003249468,0.000005269404,0.0006984336,0.00001996552,0.0006243645],"genre_scores_gemma":[0.9943204,0.0002290391,0.002658173,0.0000750543,0.000008956104,0.00001725052,0.002105981,0.00002503221,0.0005600809],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00116387,"threshold_uncertainty_score":0.003184199,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03566132732337412,"score_gpt":0.2410419588784704,"score_spread":0.2053806315550963,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}