{"id":"W4224078476","doi":"10.1126/science.abm5847","title":"Cryptic and abundant marine viruses at the evolutionary origins of Earth’s RNA virome","year":2022,"lang":"en","type":"article","venue":"Science","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":260,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université Laval","funders":"U.S. National Library of Medicine; National Institute of Allergy and Infectious Diseases; National Institute of General Medical Sciences; Grand Équipement National De Calcul Intensif; European Molecular Biology Laboratory; King Abdullah University of Science and Technology; Région Bretagne; National Institutes of Health; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung; Ohio State University; Centre National de la Recherche Scientifique; Gordon and Betty Moore Foundation; Agence Nationale de la Recherche; National Aeronautics and Space Administration; National Science Foundation","keywords":"Phylum; Human virome; RNA; Biology; Evolutionary biology; Phylogenetics; Taxonomy (biology); Viral evolution; Ribosomal RNA; Flatworm; Genetics; Ecology; Genome; Computational biology; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0002158117,0.00005281159,0.00005330285,0.00002735527,0.0008456308,0.00002058408,0.0002785651,0.000006317501,0.01211859],"category_scores_gemma":[0.00001580269,0.00003839295,0.00002229285,0.000355676,0.001096137,0.0002249351,0.001346846,0.00008475316,0.0001333065],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002137833,"about_ca_system_score_gemma":0.00002425675,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001038546,"about_ca_topic_score_gemma":0.0002398198,"domain_scores_codex":[0.9992846,0.00002318844,0.00009931777,0.0001986802,0.0002341071,0.000160067],"domain_scores_gemma":[0.9996803,0.00003007391,0.00005254944,0.0001858972,0.000005147971,0.0000460442],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00000702099,0.00003007334,0.003813844,0.000001031629,0.00000126729,0.00000176168,0.0001776325,0.0002118406,0.9939137,0.0002226233,0.0001955289,0.001423732],"study_design_scores_gemma":[0.00008148771,0.00008726156,0.7867675,0.000002236703,0.000005675472,0.00008507833,0.0001390177,0.0003323956,0.019952,0.0001838267,0.1922849,0.00007868325],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9961861,0.00004060374,0.000007622947,0.0003272379,0.000220028,0.00008209337,0.00001896521,0.000008723587,0.003108591],"genre_scores_gemma":[0.9972886,0.00001880029,0.0002716297,0.000268294,0.000009429015,0.000008988434,7.550014e-7,0.000003044423,0.002130448],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9739617,"threshold_uncertainty_score":0.9887845,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.00996597284581545,"score_gpt":0.2345956372546113,"score_spread":0.2246296644087958,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}