{"id":"W4224277562","doi":"10.1101/2022.04.18.22273968","title":"Coding Long COVID: Characterizing a new disease through an ICD-10 lens","year":2022,"lang":"en","type":"preprint","venue":"medRxiv","topic":"Long-Term Effects of COVID-19","field":"Medicine","cited_by":30,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Institute for Clinical and Translational Science, University of California, Irvine; National Center for Advancing Translational Sciences; Clinical and Translational Science Institute, Boston University; South Carolina Clinical and Translational Research Institute, Medical University of South Carolina; Center for Clinical and Translational Sciences, University of Texas Health Science Center at Houston; Center for Clinical and Translational Science, Mayo Clinic; Colorado Clinical and Translational Sciences Institute; Center for Clinical and Translational Science, University of Massachusetts; University of Colorado Denver; Center for Clinical and Translational Research; Leonard M. Miller School of Medicine; University of California, Irvine; Oregon Clinical and Translational Research Institute; University of California, Davis; Weill Cornell Medical College; University of Illinois at Urbana-Champaign; National Institutes of Health; University of California, San Francisco; Louisiana Clinical and Translational Science Center; Tufts Medical Center; Institute of Translational Health Sciences; Children's National Hospital; University of Arkansas for Medical Sciences; Vanderbilt University Medical Center; Translational Research Institute, University of Arkansas for Medical Sciences; NorthShore University HealthSystem; Southern California Clinical and Translational Science Institute; University at Buffalo; University of Rochester; Aurora Health Care; University of North Carolina at Chapel Hill; Children’s Hospital of Wisconsin Research Institute; University of Miami; University of South Carolina; Rutgers, The State University of New Jersey; Institute for Clinical and Translational Research, University of Wisconsin, Madison; Pennsylvania State University; Vanderbilt Institute for Clinical and Translational Research; University of Cincinnati; Institute of Clinical and Translational Sciences; University of Texas Medical Branch; University of California, San Diego; Johns Hopkins University; University of California, Los Angeles; Bill and Melinda Gates Foundation; University of Washington; Frontiers Clinical and Translational Science Institute, University of Kansas; Loyola University Chicago; University of Texas Health Science Center at Houston; Washington University in St. Louis; University of Michigan; University of Southern California; Harvard Catalyst; University of Minnesota; University of Pennsylvania; George Washington University; Michigan Institute for Clinical and Health Research; University of Utah; Children's Hospital Colorado; York University; Northwestern University; Vanderbilt University; Accelerated Innovation Research Initiative Turning Top Science and Ideas into High-Impact Values; University of Chicago; Georgia Clinical and Translational Science Alliance; Irving Medical Center, Columbia University; Virginia Commonwealth University; Tulane University; Brown University; Rush University; Cincinnati Children's Hospital Medical Center; University of Wisconsin-Madison; Penn State Clinical and Translational Science Institute; Ohio State University; Carilion Clinic","keywords":"Coronavirus disease 2019 (COVID-19); 2019-20 coronavirus outbreak; Coding (social sciences); Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Disease; Infectious disease (medical specialty); Virology; Medicine; Mathematics; Statistics; Outbreak; Internal medicine","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.007009303,0.0004882698,0.000412904,0.005961877,0.000848876,0.002208894,0.001235488,0.0006231187,0.007256877],"category_scores_gemma":[0.04350162,0.0002459288,0.000659433,0.006659503,0.0009233613,0.001747175,0.003471751,0.002017061,0.001216019],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00209289,"about_ca_system_score_gemma":0.00415361,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.02733777,"about_ca_topic_score_gemma":0.03264543,"domain_scores_codex":[0.9902242,0.003283045,0.002472781,0.001557564,0.001858125,0.0006042531],"domain_scores_gemma":[0.9743026,0.009978903,0.0084189,0.002521393,0.003797179,0.000980987],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001934491,0.0000785368,0.8012049,0.0009258438,0.0002023312,0.0003228979,0.003905682,0.001257192,0.0006156989,0.02094652,0.1102253,0.06012169],"study_design_scores_gemma":[0.00006836426,0.0001051023,0.7709644,0.002742983,0.0001696834,0.002311764,0.0106546,0.009717345,0.0008856891,0.04213,0.1600888,0.0001612534],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.4368313,0.006161377,0.1479354,0.02843329,0.002725126,0.001940681,0.3262024,0.0008889113,0.04888149],"genre_scores_gemma":[0.7560661,0.003479325,0.1039789,0.008292974,0.001345698,0.002185788,0.1217664,0.0002571279,0.002627655],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02733777,"threshold_uncertainty_score":0.05435729,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04835838114637993,"score_gpt":0.3440946325539762,"score_spread":0.2957362514075963,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). 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