{"id":"W4224433984","doi":"10.1128/mbio.01863-21","title":"The Phenylacetic Acid Catabolic Pathway Regulates Antibiotic and Oxidative Stress Responses in Acinetobacter","year":2022,"lang":"en","type":"article","venue":"mBio","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":60,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Manitoba","funders":"National Institute of Allergy and Infectious Diseases","keywords":"Acinetobacter baumannii; Microbiology; Phenylacetic acid; Virulence; Biofilm; Biology; Operon; Transcriptome; Pathogen; Antibiotics; Gene silencing; Mutant; Chemistry; Gene; Bacteria; Biochemistry; Gene expression; Genetics; Pseudomonas aeruginosa","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003030934,0.0001520927,0.0001418109,0.00004107472,0.0002718946,0.00005602758,0.0002596054,0.00006148434,0.00002434563],"category_scores_gemma":[0.0001223292,0.0001207919,0.0000357373,0.000128586,0.0002074682,0.000005069114,0.0003356496,0.0001395858,0.000003718835],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002757703,"about_ca_system_score_gemma":0.00006876785,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002744123,"about_ca_topic_score_gemma":0.0001508269,"domain_scores_codex":[0.9987668,0.0002582045,0.0002019345,0.000355481,0.0001261877,0.000291435],"domain_scores_gemma":[0.9993591,0.00004745311,0.00008721195,0.0004337321,0.00002729918,0.00004517704],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004130443,0.00005591412,0.08330129,0.00001356042,0.00002680857,0.00001263129,0.0001972088,0.00000519623,0.9137765,0.0001446772,0.0004326222,0.001620509],"study_design_scores_gemma":[0.0005201344,0.0002244433,0.3511199,0.0000191664,0.000008756305,0.00002644013,0.0009706966,0.00001476612,0.6234239,0.00008398404,0.02336764,0.0002201187],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9963987,0.002559046,0.00000776335,0.0003457068,0.0001561334,0.0002066167,0.00009458881,0.000009483122,0.000221967],"genre_scores_gemma":[0.9975373,0.0003127834,0.0001013722,0.0001133977,0.00006554402,0.00001007417,0.00008441126,0.0000216173,0.001753547],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2903526,"threshold_uncertainty_score":0.4925751,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007360173676419614,"score_gpt":0.2304775988929168,"score_spread":0.2231174252164972,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}