{"id":"W4224669774","doi":"10.1038/s41564-022-01091-2","title":"Population genomics confirms acquisition of drug-resistant Aspergillus fumigatus infection by humans from the environment","year":2022,"lang":"en","type":"article","venue":"Nature Microbiology","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":240,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Natural Environment Research Council; Medical Research Council; Directorate for Biological Sciences; Medical Research Council Centre for Medical Mycology; Trinity College Dublin; Wellcome; Imperial College London; Research Councils UK; Biotechnology and Biological Sciences Research Council; University of Exeter; Cystic Fibrosis Trust; Department of Health and Social Care; National Institute for Health and Care Research; Gilead Sciences; Sight Research UK; Wellcome Trust; Canadian Institute for Advanced Research","keywords":"Biology; Aspergillus fumigatus; Drug resistance; Population; Genetics; Antifungal drug; Genome; Azole; Gene; Clade; Genotype; Microbiology; Candida albicans; Antifungal; Phylogenetics; Medicine","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002411107,0.0001236896,0.0002186753,0.0004716458,0.0002065918,0.0003854746,0.0001271947,0.0002709572,0.001268487],"category_scores_gemma":[0.0006794219,0.0001185417,0.0002135464,0.0004599493,0.0002810779,0.0001367957,0.0002669045,0.0002785165,0.0001676938],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001945327,"about_ca_system_score_gemma":0.0001134225,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004941166,"about_ca_topic_score_gemma":0.004619417,"domain_scores_codex":[0.9997244,0.00006456958,0.00001015979,0.0001119273,0.00003050374,0.00005835395],"domain_scores_gemma":[0.9997751,0.00004302842,0.00007685641,0.00003261572,0.00003192762,0.00004045462],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0004020809,0.00003594713,0.9177602,0.00002760113,0.0001790979,0.0004979057,0.0006879601,0.0004608399,0.06617212,0.000294955,0.0002798082,0.01320146],"study_design_scores_gemma":[0.000002761437,0.00007421528,0.9981381,0.000003029689,0.00001777893,0.0003949591,0.0002534042,0.0002087317,0.0005392731,0.000082292,0.0002818785,0.000003566382],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9988912,0.0001033889,0.0003777884,0.00003554631,0.000001457083,0.000002640664,0.0001729704,0.000004184457,0.0004109706],"genre_scores_gemma":[0.9995308,0.00007503665,0.0001401122,0.0000265348,0.000002526706,0.000001800736,0.000137312,0.000002108342,0.00008383086],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004941166,"threshold_uncertainty_score":0.009824812,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.00489934870791853,"score_gpt":0.2255662881067755,"score_spread":0.2206669393988569,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}