{"id":"W4224861424","doi":"10.3390/microorganisms10050908","title":"Persulfide-Responsive Transcription Factor SqrR Regulates Gene Transfer and Biofilm Formation via the Metabolic Modulation of Cyclic di-GMP in Rhodobacter capsulatus","year":2022,"lang":"en","type":"article","venue":"Microorganisms","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":12,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Japan Society for the Promotion of Science; Natural Sciences and Engineering Research Council of Canada; Kurita Water and Environment Foundation; Institute for Fermentation, Osaka","keywords":"Rhodobacter; Biofilm; Mutant; Gene; Chemistry; Transcription (linguistics); Intracellular; Transcription factor; Gene expression; Biology; Biochemistry; Cell biology; Bacteria; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001724765,0.0004251476,0.0002172087,0.0001810935,0.00009129311,0.0002084048,0.0001606573,0.0002042347,0.0003696991],"category_scores_gemma":[0.0001330049,0.0001646548,0.0002470274,0.0001004104,0.0002083653,0.0001398194,0.0002397541,0.0003511014,0.0002851091],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002721458,"about_ca_system_score_gemma":0.0001686381,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001138995,"about_ca_topic_score_gemma":0.0007316878,"domain_scores_codex":[0.9998395,0.00002687948,0.00001475641,0.00003910748,0.00005060053,0.0000290316],"domain_scores_gemma":[0.9998912,0.00001434152,0.00003677166,0.00001059533,0.00001858414,0.00002853548],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00002024646,0.000005766517,0.00007460738,0.00000679894,8.813771e-7,0.0000128589,0.000006353406,0.00001591272,0.9996958,0.00001525103,0.000005176808,0.0001403808],"study_design_scores_gemma":[0.00001647158,0.000190058,0.01320741,0.000006649992,0.0000141414,0.0001672426,0.00007936968,0.002520781,0.9829577,0.00007285768,0.0007558446,0.00001148817],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9973336,0.0006667008,0.001268809,0.00008120568,0.00001234612,0.000007971445,0.000140313,0.00006242737,0.0004265237],"genre_scores_gemma":[0.9970483,0.0002299354,0.001367373,0.00003803446,0.000005106699,0.00001630859,0.0002543225,0.00002122963,0.001019425],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001138995,"threshold_uncertainty_score":0.002264738,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008651024270874972,"score_gpt":0.1996291382483019,"score_spread":0.1909781139774269,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}