{"id":"W4224861424","doi":"10.3390/microorganisms10050908","title":"Persulfide-Responsive Transcription Factor SqrR Regulates Gene Transfer and Biofilm Formation via the Metabolic Modulation of Cyclic di-GMP in Rhodobacter capsulatus","year":2022,"lang":"en","type":"article","venue":"Microorganisms","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":12,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Japan Society for the Promotion of Science; Natural Sciences and Engineering Research Council of Canada; Kurita Water and Environment Foundation; Institute for Fermentation, Osaka","keywords":"Rhodobacter; Biofilm; Mutant; Gene; Chemistry; Transcription (linguistics); Intracellular; Transcription factor; Gene expression; Biology; Biochemistry; Cell biology; Bacteria; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0001508414,0.0001446407,0.0001659505,0.00008197492,0.0002354201,0.00003212106,0.0001389409,0.00005374832,0.001808346],"category_scores_gemma":[0.000005173936,0.0001210911,0.00007161825,0.0002739662,0.00009782653,0.0004013574,0.00006718247,0.0001751411,0.0000199181],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001379224,"about_ca_system_score_gemma":0.000007277146,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000931985,"about_ca_topic_score_gemma":0.0003560873,"domain_scores_codex":[0.9989759,0.0001553078,0.0003104408,0.0002261981,0.0001342426,0.0001979616],"domain_scores_gemma":[0.9996772,0.00002752609,0.00006733045,0.0001799474,0.00001052879,0.00003751257],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00005982021,0.00005334558,0.0003951213,0.000004109445,0.00001117508,0.000001021657,0.007222112,0.0005432855,0.9881334,0.00001463008,0.00001833458,0.003543595],"study_design_scores_gemma":[0.0003297855,0.00004488367,0.3708156,0.000002995975,0.000020962,0.00004579692,0.000383153,0.0005136817,0.6261771,0.00005298737,0.001507969,0.0001050942],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9971346,0.0001662862,0.001565,0.0004473593,0.0001552999,0.000367601,0.0001173041,0.00001755129,0.00002903029],"genre_scores_gemma":[0.9992929,0.00006627893,0.0002252556,0.0001393907,0.00001274461,0.00002430356,0.00005792958,0.00001940757,0.0001618564],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3704205,"threshold_uncertainty_score":0.9991041,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008651024270874972,"score_gpt":0.1996291382483019,"score_spread":0.1909781139774269,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}